XLOC_028841 (si:ch211-231i17.4)


Basic Information

Item Value
gene id XLOC_028841
gene name si:ch211-231i17.4
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007115.7
NCBI id CM002888.2
chromosome length 78093715
location 29828668 ~ 29833326 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00055863
gataaagcttccaaacacagagaaaaactcctgctgaagcgactgatctccacactgttataaagatggcgtttattaaagaggagagtgaagatgtgaagattgaagaaacattcacagtcaaacaggaagatctgcaggaacaaacagacCAAATTGAAGAAAATGAgtggagtaaagaggaggaacaccccgtcaaaattgaggaaaaaactattttacagactgatggcattttgaaaaggagagagaaGAAACGTTTCACTTGCacgcagtgtggaaagagtttggcaagcaaaagcaaacttaagagtcacatgaggatccacactggagagaaaccattcacatgcactcagtgtgggaagagtttcagccgatcatcatcccttaatatacacatgatgatccacactggagagaaaccattcacatgcactcagtgtgggaagagtttcaacaaaTCATTATCCCTTAATTTACACAAGATGAGccacacaggagagaaaccattcacatgcaatcagtgtgggaagagtttcagccaatcatcatcccttaatatacacatgatgatccacactggagagaaaccattcacatgcaatcagtgtgggaagagtttcagtcaatCGTCAGACCTTAAtatacacatgatgatccacactggagagaaaccattcacatgcaatcagtgtgggaagagtttcagtcaatCGTCAGACCTTAATgtacacatgaagatccacactggtgtgaaagagcatatgtgctttgagtgtaaGAAAACTTTTAATACAGCTCCAAATTTAAAATtgcaccagacgattcacactggagagacgtgaagtgttcacactgtgacaagaggtttaatcagttaacacatctgaaaacacaaaagaggatttacactggagagaaaccgtactgATCTGAACAGTGTCTACA

Function

symbol description
si:ch211-231i17.4 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription, DNA-templated.

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDARG00000094903

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00055863 True 951 mRNA 0.41 2 29828668 29833326

Neighbor

gene id symbol gene type direction distance location
XLOC_028840 NA coding downstream 6968 29821320 ~ 29821700 (-)
XLOC_028839 si:ch211-231i17.3 coding downstream 7529 29820388 ~ 29821139 (-)
XLOC_028838 znf1119 coding downstream 59364 29758289 ~ 29769304 (-)
XLOC_028837 si:dkey-191j3.1 coding downstream 74773 29753347 ~ 29753895 (-)
XLOC_028836 NA coding downstream 121449 29705193 ~ 29707219 (-)
XLOC_028842 NA coding upstream 131952 29965278 ~ 29967134 (-)
XLOC_028843 si:rp71-7l19.2 coding upstream 212167 30045493 ~ 30057608 (-)
XLOC_028844 NA coding upstream 270859 30104185 ~ 30141117 (-)
XLOC_028845 si:ch211-22k7.9 coding upstream 312658 30145984 ~ 30174588 (-)
XLOC_028846 si:dkey-265e15.2 coding upstream 375864 30209190 ~ 30249797 (-)
XLOC_028834 NA non-coding downstream 564214 29261963 ~ 29264454 (-)
XLOC_028833 NA non-coding downstream 680889 29146105 ~ 29147779 (-)
XLOC_028832 NA non-coding downstream 685942 29139745 ~ 29142726 (-)
XLOC_028848 NA non-coding upstream 482477 30315803 ~ 30319511 (-)
XLOC_028851 CR383668.2 non-coding upstream 530436 30363762 ~ 30364502 (-)
XLOC_028852 NA non-coding upstream 572528 30405854 ~ 30407827 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
rainbow trout (Oncorhynchus mykiss) LOC110513273 LOC106564400 misc NC_048581.1 CM023235.2 16602521 ~ 16607366 (+)