XLOC_028842


Basic Information

Item Value
gene id XLOC_028842
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007115.7
NCBI id CM002888.2
chromosome length 78093715
location 29965278 ~ 29967134 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00058235
CCCGCCCATGGCGCTCAGTCTGAGGCAGAGAGTACAGAGGTTTGTTTGCTGTTTATCACCTTTAATTCCACTTATGTTACGGGTGTTGTGCATCTATTcaaagtaaatatattatatCTGACCTTTGTAGTGTTCGCAGATGTGCTGCAATTATCTTGCGGGTTGAACTGCTTTTACTTATGTGCCTAATGCTAATATACTCTCTTGTTTTTAGCTCGATGCTACGCTTTAAACACTTCTGTAATGCGTTAACAGTTAATCGCGGGTCATCTAcagggtaaagttggttttatatttggatattcagacattctccttaataatataatttcagaaaaatatttattgcaaattcttaatagggaaatcatattagcagccaatgactatcaaagtacaacatcgTTTACAGTCTATTAGTTCAAAGTCAAATGaacagtattaatgttattttcaagtcatacttgcatgctaattccgatcgaatattcaaagtaacatggtaaacaatatagagacttctaaataaacgaatgtgcgtatataaaaccaactttacccatttaaatcatattagcagccaatgattatcaaagtacaacattctTTACAGTCTATTAGATAGTTCTTATGTTGTTTTAAGGTCAAGTCTTTATATTGTTTATCGTGTTACGtgaatattcaaattagcatgcgagtatgacttcaaaacaacattaacactaattCACTGTGAatagtgttgtactttgatagtcattggctgcttttatttccctatttagaatttgcaaaaactacttttatgaaattatattattaaggtgaATGTCTGAATAACCCAAtagaaaaccaactttacctctatgagaTGTAGAATCAGCCACTGAAGACTTGCACACATTAAAAACCTATGTGTAACTTAATcgaatgtatatattttaaatgatgttagagaatgtttttattcaggaaatatttttaaggcaaatgtttaaaaatgtgttttctggAGGACTTTTTTTATCATTGATCAGACTGAAAGAGCTTATAAGATATTGagtgttgttgttatttgtgtgtttaaaaaaacaattgatgTTTCAGAAAGAGTTATGATTGTCAATtatattaagaatatttaatacAAGTTATGCCATGAATATAGATATAGCGCTGCTAATAtggcattaaaatataaatatatgcaaagaACGTAATTAGAATATATGTCTCCTCCTCCAGTGAAGCTCCTACTCCTCCGGTTCATCTATAAACACTGGAGTTTTCATATCATGCTCCAGTGAAGAGTTCATTGAAGGACAGCAAGaacatgagtgatccagaaccctgcaaaattaaaaatgaagactCTGAACAACAAATAGGTTGGTGTTTATTTCTGATTAGGGGTTGCGCGAGGGGTTTGTTGGGCTTTTGTGGCTTCAGCCCCGAATGTATTTTCCAAAGCCATCAATCTTTTGGGTTTAAGTTTTGTCAGGgtagtttttcaacacattatgcAGAAATATTAAAACCGATTCATTATTGCTTTCCCACAGGATCAATAAAGCAATATCAGCTGGGCTTTCTCTacctcttttctttatttaagagtttttgtttattttttttttcatcagaggCAGCCCCACAGTAGTAAGCACTTTCTGTCTCTCCTTTCTGAAAGCGAGTTTgcgaacacagacacacacacacacacacactgtggtcCTGCATAGCCACGTCTCCTGTCAGTCACT
>TCONS_00058236
GGAGACTGATTGAGAAACAGGCAGCCAATCAGCTTTATCTGAGCCACATACAGACAGCCAATCAGCTTTCGCTGATCTGCGTGCAGGCAAATATCCCGCCCATGGCGCTCAGTCTGAGGCAGAGAGTACAGAGTGAAGCTCCTACTCCTCCGGTTCATCTATAAACACTGGAGTTTTCATATCATGCTCCAGTGAAGAGTTCATTGAAGGACAGCAAGaacatgagtgatccagaaccctgcaaaattaaaaatgaagactCTGAACAACAAATAGGATCAATAAAGCAATATCAGCTGGGCTTTCTCTacctcttttctttatttaagagtttttgtttattttttttttcatcagaggCAGCCCCACAGTAGTAAGCACTTTCTGTCTCTCCTTTCTGAAAGCGAGTTTgcgaacacagacacacacacacacacacactgtggtcCTGCATAGCCACGTCTCCTGTCAGTCACT

Function

GO:

id name namespace
GO:0022412 cellular process involved in reproduction in multicellular organism biological_process

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00058235 False 1763 lncRNA 0.34 1 29965278 29967040
TCONS_00058236 True 477 lncRNA 0.44 3 29965278 29967134

Neighbor

gene id symbol gene type direction distance location
XLOC_028841 si:ch211-231i17.4 coding downstream 131952 29828668 ~ 29833326 (-)
XLOC_028840 NA coding downstream 143578 29821320 ~ 29821700 (-)
XLOC_028839 si:ch211-231i17.3 coding downstream 144139 29820388 ~ 29821139 (-)
XLOC_028838 znf1119 coding downstream 195974 29758289 ~ 29769304 (-)
XLOC_028837 si:dkey-191j3.1 coding downstream 211383 29753347 ~ 29753895 (-)
XLOC_028843 si:rp71-7l19.2 coding upstream 78359 30045493 ~ 30057608 (-)
XLOC_028844 NA coding upstream 137051 30104185 ~ 30141117 (-)
XLOC_028845 si:ch211-22k7.9 coding upstream 178850 30145984 ~ 30174588 (-)
XLOC_028846 si:dkey-265e15.2 coding upstream 242056 30209190 ~ 30249797 (-)
XLOC_028847 si:dkey-233e3.3 coding upstream 295265 30262399 ~ 30269748 (-)
XLOC_028836 NA non-coding downstream 258059 29705193 ~ 29707219 (-)
XLOC_028834 NA non-coding downstream 700824 29261963 ~ 29264454 (-)
XLOC_028833 NA non-coding downstream 817499 29146105 ~ 29147779 (-)
XLOC_028832 NA non-coding downstream 822552 29139745 ~ 29142726 (-)
XLOC_028848 NA non-coding upstream 348669 30315803 ~ 30319511 (-)
XLOC_028851 CR383668.2 non-coding upstream 396628 30363762 ~ 30364502 (-)
XLOC_028852 NA non-coding upstream 438720 30405854 ~ 30407827 (-)
XLOC_028856 NA non-coding upstream 573865 30540999 ~ 30546286 (-)

Expression


Co-expression Network