XLOC_028843 (si:rp71-7l19.2)


Basic Information

Item Value
gene id XLOC_028843
gene name si:rp71-7l19.2
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007115.7
NCBI id CM002888.2
chromosome length 78093715
location 30045493 ~ 30057608 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00055864
ATCAGGaccatgtgtgtccagctctgtgtctctgaataGTGACTGGTCTAAAGATCATCCACCATACCTTACAGAGAAAACACCATCACCTGCCCAaagtgttgaatatGAGTTACCAGATGCAGGAGACAAAACTAACAGGACCCACAAGAGTTTTACAGGCAATCTCCTGTTGATCTTCCAGaatcttgagagtaAAATTATCAGCTTTTTAAAGAATGAACTGGCAAAGTTTAAGAAAATCTTAAACAAAGAATACAgtcaagattttttaaagaactttaatgagaacagaagcagtatcacagaagcagctcttgatctcacactcttcttcctgagagagatgaagcaagatcaagctgctgagACTCTCGAGGATGAGCTGTTCTTCATcaatcagcttaaatgtagcctgaagaagaaatatcaaagtgtgttggAGGGAAatgctcagcaaggagactccacacttctgaataacatctacacagatctctatatcactcagggtgtaagtaaacaggtcaacactgaacatgagatcagacagattgaagctgcttccagacgtcatcagtcactagagatgaagattgaatgcaaacatttgtttgaagcaccTGAACAAGACAAGCAGAttagaactgtcctgacaaaaggagttgctggcatagggaaatcagtctctgtgcaaaagtttgttctggattgggccgaaggaaaagaaaatcaagacataaacttcatatttcctcttccattcagagagatgaacttaaaggagaaagaaaaacaaagtttaaaagacctcataactcagtttttcatagagactaaaggactgaaccttacaagaagcacacggttcaaagtcctgttcatccttgatggattggatgaatgtcgtcttcctctgaactttgctggtaatgagacgtgtcgtgatgtatcttcagcagtctctttggatgttctcctgacgaacctcatcaagggaaatctgcttccttctgctctcatctggatcaccagcagaccagcagctgccagtaagattcctgctgactgtatcgaccggctgacagagatacaaggattcaatgatgcccaaaaggaggagtacttcagaaagagactcacagacccgaatcaggccagagaaatcattgatcacattaaacagtcaaatagtctctttattatgtgccacatcccaatcttctgctggatttcagccactgttttcCAGAATGTTTTGAAGGAGAACAGAAATACtgaactgaaacacagggctaatgttgaaacactgcaggaatctcccaagtgtctgacacagatgtacacacactttctccgttgtcagatccagcagagcaggcGAAAGTATGATAGAGAAAACACAccagatgtctcctgggatcaaaacctcatcctttcactggggaaactggccttccaacagctggaaagaaacaatgtgatcttctatgagagcgatctaaaagactgtggcattgacgtctataaggcctcggtgtactcaggcatgtgtactcAGATCTTTAAGAAGGAGACaggaatcattcttggtaccatgtactgctttcttcacttgagcattcaggagttcattgctgCACTTTATGAGCATCTAATTCTAGACATCAACAAGAAACCTTTTCCTATTTTTAAGttgaaaagcaaaaataaatgtctGATTGATTTGCTAAAGgctgcagtggacaaggctctggaaagtgagaatggacatctggacctttaccttcgcttccttctcggtctgtcactccagtccaatcgacaactcttacgaggcctgttgacacagcaggatgacagagacaagagcaaaaagaaaataattgcatacatcaagcagaaacttgaaggaaatctgtctccagagagatccatcaatctgttctactgcctgaatgaactgaacgaccaaactctgctgaaagagattcagtctcacctcagtagaggaagtctgtcatctgctgatctttcacctgcccagtggtctgctctggtctttgtgttgttgacctcagagaaggagctggaggagtttgagcttcagaaattccagagatcagacgagtgtctcattagactatcagcagtcatcaaaacctccaaaagagctcAGCTACAGTGCTGTAATCTTACTTTTCgttcttgtgagagtttgtcttcagctctacaatcctcaaccTGTGTTCTGAAAGAGCTGGACCTGAGtgacaatgacctgcaggattcaggagtgaagcttctctctgatggactgaagagtccaaactgtaaactggagatcCTGCGattgtctggctgtatggtgacagtggaaggctgtggttttctgtcttctgctctgacttcaaacccctcacacctgagagagctggatctgagctacaaccATCCAGGAGATTCTGGAGTCAAGCTGCTCACTGAAAAACTGGAGGATTCAAACTACACACTGGATAAACTCAAtctggatcatggaggagaaaTGAGGATTACAGCTGGACCACACAAATatgcctGTTTCCTCACACTGGATCTAAACACGGCAAACACTGAACTTagtctgtctgaggagaacagagaggtcaAGTGTGTGTGGGAGAATCAGTCGTATCccgatcatccagacagatttgatcgTGTACTTCAGGTGTTGTGcgaagagagtgtgtgtgaacgctgttactgggagattgactggactGGAGATCatggtgtgtgtatatcagtgtcatataagagcatcagcagGAAGGGAGGCAATGAGTGTTTGTTTGGACGTAacgctcagtcctggagtttgatctgcTTTTCCACCAGCTTCTCATTCATACACAATAACATAAAGACTAATCTCTCAGTAAAGCCGCTCAGCagtagaataggagtgtttgtggatcacagtgcaggaactctcattttctacaacatctatagaaacacaatgagcctcatccactcagtccagaccacattcactgagccgctctatcCTGGGTTTTGGGTTTATTCTGGATCATCTGTGAAACTGTGCTGAAGTCTACAAGACGGAAAAGAGATCAGACCACAGGTTTCGTCAGTAGCAGTGAGATGCTTTGGAGTCTCTTCTTCTCACACAATCCTCAAAAACTTCTGTCTCTGAGAGAACATTTGTATCAGAAATCctcatgtgtgtctgtgtaagaGAGACAGAtcatttgaaattacttttgtatTATAATGTTAATGTGATCAGTCTTGATTATAAATGCAGTCTAAATTTAATGATCACTGGAAACTGGAGATTCAGAAGATTACACTCTGAATTACCAAAATTAGTAGCAAATTAGTTAATTATACAGAAGGGTGAGAAAAGACTAATACGTTTAGACTCTAACCATATTGTTGGATTCTGTCCTACAAATACCAATACAAAGTGGACTCTTACAAAGTGGTGACCCCGACGTGATATTCTAGAAAGTTTCAGGCCAGTGATGTCTTTCAGTGGTGTGTAAGGTGTTTGCTCCATACTGCTTTCTTTATTCTAATttctttgcatgtttgtcacacttcaATGTTTCAGATCAAACAAACAGTGGGGCCTTGGATAGCGGAGGGGTGTCGTGGTGTTAagttaacctgttagccagcactcaattttgggcATTTACActtacctaactttaaatagtaacagttcctgactccagtaaaaaatataaaaagttatatattatGAGGAAAAAATCgtattgtgttcaatatttgtttttcatatacaaacacaggaaaacattaatgtaatgtcctagaaaaaTATGACGACAGCATGCAAAATGACATTTCTGTAAAGCAATTTCTGTAAAGAGATTTCTgaggcactttctcaaaaattATCTTCCCAAAGCTAAAACATTTAGTTGCTGAatgatttggtctacattcacagtttatgtatcattggaaagaagacactctgggctttattatccatcatctagagtttataatgctcaaaatggaaaaaaaatattatggatgctttagtaatgtaaaaaaaattgcactgcactaaacattttattatttcaaaaacaaatatgtgaaatcAGTCCTGGATCAACACAGAAAAGTAATAGgtcaaaagcccacatctcctgagtatatgttttgaatttgatgccatTATCATACAAAATGAAATTTCTGGAATTCAAATTTTGAGACAATGTCTTgtgatttttttcccccctctcCTTGTTTGTGGAGAAGCAGTCTAATGACCACATACACACTGACGGTTTCACACTCCacaaattaattgtaaaataataatcagAAACGTACAGcatgaatgatttatttgagcACAAGTAGTACATTGTATAAAATAAGTCTAGAGCAAATGCAACAAAAAGTCTTATTAAAGTCTTCTTAAAAGTCAGAAGATTCTTCACTCCATCACTCCAGCGCAGAGATACAGCTACATGACAAAAACAGAATTAGCATTCTGTTGTAAACAATAGTGTTTCCCCTCTTGAGTAGCAAACACAATTTACTCTGATGCccatttattcatattataattATACACATAGCTTAGCTTACAGATGTACCAGAAGCCATTCAGATAGTGCCAAACATTACTAAAAGATTATGGCTAGCGGATAGACATTCACACTTTTAGGCATGAGCAGGCTAAACATAGAAGACCTGAGACGTAAACAACAAGCAATGACTGTATAATAAGTTACTCACCGTTATAAAAACCGAAAGTAAGGCTTTATCCACGTCGTGTAAGTATGAGCTCTCCTCAGaaatattttcctttgtttactttttgcaaaCGAGCCGCTCTGCCGTTAGCTTGAGCTGTTAGCAGCTGTGCGTGCACTCTGTGCAGGGGGCAGGTGCATCGAGTGATGATTGACAGTTTTATGAGCCAGTAGCAGCAAAAAGTGTGCAGTAACATGAAAATCACGCAGCCACTGGCTAAATTCTCTGTCAGTCAAACTTCTGGGAAATAGGAAGTGATTTCTGTGACTAATCGATAGCAATGACAGAGACATACAGACGTTCAAAACACTcggctttgtttagattttagtaactataactttgactttttatttagtttgtggtctcattttgtctgtaacactgtaagctatgACATTGACTGGTCTTTTACTCCAAAGACTGTTTTCACGTGTAAGTATCATGGTAAAACGGTGTaaaccaggcgtgtccaaactacggcctgcgggccatctgcggcccgcaatcagttttgtggcggcccgcgaggctttttataaatatcaatagaatctggcccgctatacaaaaatgaacgtaattcaataaataaccaccgggtatcactattacatgcattcaattaagcagcagttcttgttatgatctatctatctatctatctatctatctatctatctatctatctatctatctatctatctatctatctatcttcacacagttgaagtctgaattatttgcccctctttgatttatttcttcttttttaaatatttcccaaatgatgtttaacagagcaagaacatttttaccgtatgtctgataatattttttctttaggagaaagacttttgttttatttcggcttgaataaaaagcggtttaaatttttttatgaaccattttaaggtcaaaattattagccccttaagtcttcagaacaaaccattgttataaaataacttgcctaaataccttaacttaactagttaacttgattaacctactaaagcctttaaatgtcactttaagctgtatagaagtgtcttaaaaatatctagtcaaatattatttactgtcatcatggcaaatataaaataaatcagttattagaaatgagttactaaaactaatatgtttagaaatgtgtggaaaaaaatcttctctccgttaaacagaaattggggaaaaaataaacgggggctaacaatttaggggggctaacaattctgacttcaactgtatttataaatatatatacgtgtctgtgtgatgtatgtaaaatttggcccgcaacaacgtttgtttttttgcatctggcccttggcccaaaaagtttggacacccctggtgtaaacaATAGGTCTCCGGCAGAAACggtgacataaacaaatgaataaccattaaTATTTCAACACTACTGTGTTGGTGGACTAAATGTGTTTGATGGGATGTTTTTCAGTGGACTCTGacctttcaaaataaaacatgatgcacagcaatgaat
>TCONS_00055865
ATGCAGGAGACAAAACTAACAGGACCCACAAGAGTTTTACAGGCAATCTCCTGTTGATCTTCCAGaatcttgagagtaAAATTATCAGCTTTTTAAAGAATGAACTGGCAAAGTTTAAGAAAATCTTAAACAAAGAATACAgtcaagattttttaaagaactttaatgagaacagaagcagtatcacagaagcagctcttgatctcacactcttcttcctgagagagatgaagcaagatcaagctgctgagACTCTCGAGGATGAGCTGTTCTTCATcaatcagcttaaatgtagcctgaagaagaaatatcaaagtgtgttggAGGGAAatgctcagcaaggagactccacacttctgaataacatctacacagatctctatatcactcagggtgtaagtaaacaggtcaacactgaacatgagatcagacagattgaagctgcttccagacgtcatcagtcactagagatgaagattgaatgcaaacatttgtttgaagcaccTGAACAAGACAAGCAGAttagaactgtcctgacaaaaggagttgctggcatagggaaatcagtctctgtgcaaaagtttgttctggattgggccgaaggaaaagaaaatcaagacataaacttcatatttcctcttccattcagagagatgaacttaaaggagaaagaaaaacaaagtttaaaagacctcataactcagtttttcatagagactaaaggactgaaccttacaagaagcacacggttcaaagtcctgttcatccttgatggattggatgaatgtcgtcttcctctgaactttgctggtaatgagacgtgtcgtgatgtatcttcagcagtctctttggatgttctcctgacgaacctcatcaagggaaatctgcttccttctgctctcatctggatcaccagcagaccagcagctgccagtaagattcctgctgactgtatcgaccggctgacagagatacaaggattcaatgatgcccaaaaggaggagtacttcagaaagagactcacagacccgaatcaggccagagaaatcattgatcacattaaacagtcaaatagtctctttattatgtgccacatcccaatcttctgctggatttcagccactgttttcCAGAATGTTTTGAAGGAGAACAGAAATACtgaactgaaacacagggctaatgttgaaacactgcaggaatctcccaagtgtctgacacagatgtacacacactttctccgttgtcagatccagcagagcaggcGAAAGTATGATAGAGAAAACACAccagatgtctcctgggatcaaaacctcatcctttcactggggaaactggccttccaacagctggaaagaaacaatgtgatcttctatgagagcgatctaaaagactgtggcattgacgtctataaggcctcggtgtactcaggcatgtgtactcAGATCTTTAAGAAGGAGACaggaatcattcttggtaccatgtactgctttcttcacttgagcattcaggagttcattgctgCACTTTATGAGCATCTAATTCTAGACATCAACAAGAAACCTTTTCCTATTTTTAAGttgaaaagcaaaaataaatgtctGATTGATTTGCTAAAGgctgcagtggacaaggctctggaaagtgagaatggacatctggacctttaccttcgcttccttctcggtctgtcactccagtccaatcgacaactcttacgaggcctgttgacacagcaggatgacagagacaagagcaaaaagaaaataattgcatacatcaagcagaaacttgaaggaaatctgtctccagagagatccatcaatctgttctactgcctgaatgaactgaacgaccaaactctgctgaaagagattcagtctcacctcagtagaggaagtctgtcatctgctgatctttcacctgcccagtggtctgctctggtctttgtgttgttgacctcagagaaggagctggaggagtttgagcttcagaaattccagagatcagacgagtgtctcattagactatcagcagtcatcaaaacctccaaaagagctcAGCTACAGTGCTGTAATCTTACTTTTCgttcttgtgagagtttgtcttcagctctacaatcctcaaccTGTGTTCTGAAAGAGCTGGACCTGAGtgacaatgacctgcaggattcaggagtgaagcttctctctgatggactgaagagtccaaactgtaaactggagatcCTGCGattgtctggctgtatggtgacagtggaaggctgtggttttctgtcttctgctctgacttcaaacccctcacacctgagagagctggatctgagctacaaccATCCAGGAGATTCTGGAGTCAAGCTGCTCACTGAAAAACTGGAGGATTCAAACTACACACTGGATAAACTCAAtctggatcatggaggagaaaTGAGGATTACAGCTGGACCACACAAATatgcctGTTTCCTCACACTGGATCTAAACACGGCAAACACTGAACTTagtctgtctgaggagaacagagaggtcaAGTGTGTGTGGGAGAATCAGTCGTATCccgatcatccagacagatttgatcgTGTACTTCAGGTGTTGTGcgaagagagtgtgtgtgaacgctgttactgggagattgactggactGGAGATCatggtgtgtgtatatcagtgtcatataagagcatcagcagGAAGGGAGGCAATGAGTGTTTGTTTGGACGTAacgctcagtcctggagtttgatctgcTTTTCCACCAGCTTCTCATTCATACACAATAACATAAAGACTAATCTCTCAGTAAAGCCGCTCAGCagtagaataggagtgtttgtggatcacagtgcaggaactctcattttctacaacatctatagaaacacaatgagcctcatccactcagtccagaccacattcactgagccgctctatcCTGGGTTTTGGGTTTATTCTGGATCATCTGTGAAACTGTGCTGAAGTCTACAAGA

Function

symbol description
si:rp71-7l19.2 Predicted to be involved in intracellular signal transduction.

GO:

id name namespace
GO:0035556 intracellular signal transduction biological_process
GO:0005524 ATP binding molecular_function
GO:0000166 nucleotide binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-081103-31 Predicted to be involved in intracellular signal transduction.

Ensembl:

ensembl_id ENSDARG00000043792

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00055864 False 6328 mRNA 0.39 8 30045493 30057608
TCONS_00055865 True 2989 mRNA 0.43 7 30048713 30055196

Neighbor

gene id symbol gene type direction distance location
XLOC_028842 NA coding downstream 78359 29965278 ~ 29967134 (-)
XLOC_028841 si:ch211-231i17.4 coding downstream 212167 29828668 ~ 29833326 (-)
XLOC_028840 NA coding downstream 223793 29821320 ~ 29821700 (-)
XLOC_028839 si:ch211-231i17.3 coding downstream 224354 29820388 ~ 29821139 (-)
XLOC_028838 znf1119 coding downstream 276189 29758289 ~ 29769304 (-)
XLOC_028844 NA coding upstream 46577 30104185 ~ 30141117 (-)
XLOC_028845 si:ch211-22k7.9 coding upstream 88376 30145984 ~ 30174588 (-)
XLOC_028846 si:dkey-265e15.2 coding upstream 151582 30209190 ~ 30249797 (-)
XLOC_028847 si:dkey-233e3.3 coding upstream 204791 30262399 ~ 30269748 (-)
XLOC_028848 NA coding upstream 258195 30315803 ~ 30319511 (-)
XLOC_028836 NA non-coding downstream 338274 29705193 ~ 29707219 (-)
XLOC_028834 NA non-coding downstream 781039 29261963 ~ 29264454 (-)
XLOC_028833 NA non-coding downstream 897714 29146105 ~ 29147779 (-)
XLOC_028851 CR383668.2 non-coding upstream 306154 30363762 ~ 30364502 (-)
XLOC_028852 NA non-coding upstream 348246 30405854 ~ 30407827 (-)
XLOC_028856 NA non-coding upstream 483391 30540999 ~ 30546286 (-)

Expression


Co-expression Network