XLOC_028845 (si:ch211-22k7.9)


Basic Information

Item Value
gene id XLOC_028845
gene name si:ch211-22k7.9
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007115.7
NCBI id CM002888.2
chromosome length 78093715
location 30145984 ~ 30174588 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00055868
ttcttctttctcagattggccatgtgtaaactcactgttcagtgttgtgagagtttgtcttcagctctacaatcctcaaactgtgtgctgagagagctggacctgagtaacaatgacctgcaggattcaggagtgaagaagctctctgatggactgaagagtcaactctgtaaactggagacactgagattgtctggctgtatggtgacagaggaaggctgtggttttctgtcttcagctctgacttcaaacccctcacacctgagagagctggatctgagctacaatcatccaggagattcaggagtcaagctgctctctgaacaactggaggatccaaactacacactggacaaactcaatctggatcatggaggagagaagaGGATTAAAGCAGGACCAGACAAATGtatgtacacacagacacacacagttaTAGTGAGTGTTGTTGTGTTATAAAtgcactcaactcattctgtctgaggagaacagagaagtaaagtgtgtgtgggtttgattgactggagtggagatcatctgtgtatatcagtgtcatataagagcatcaagAGGTCATGAGACTTGgtttggatataatgctcagtcTTGGAGTTTGTTTTGGTCGTCTTCCAGTTTCTTATTCATTCAGAATGATACAGAGACTCGTCTCCCTGTACAGCCACtaagcaggagaataggagtgtttgtggatcacagtgcaggaactctgatcttctacaacatcagTGAAGACACagtgagcctcatccactcagtccagaccacattcactgagccgctctgccctgggtttacTGTTTATCGCGAatcatcagtcaaactgctgaaGACTGAGAGACAGAAGAGAGATTTACCCATAACCCTCCGCAGAATCAGTCAGTAACAGTGAGATTTTCTGTGGACtcttctgtgtatgtgtgtgagagagagtgta
>TCONS_00055869
tgtgttcttctttctcagactggtcatgtgtaatctcactgttcagtgctgtgagagtttgtcttcagctctacaatcctcaaactgtgtgctgagagagctggacctgagtaacaatgacctgcaggattcaggagtgaagaagctctctgatggactgaagagtcaacactgtaaactggacacactgagattgtctggctgtatggtgacagaggaaggctgtggttttctgtcttcagctctgacttcaaacccctcacacctgagagagctggatctgagctacaatcatccaggagattcaggagtcaagctgctctctgaacaactggaggatccaaactacacactggacaaactcaatctggatcatggaggagagaagaGGATTAAAGCAGGACCAGACAAATGtatgtacacacagacacacacagttaTAGTGAGTGTTGTTGTGTTATAAAtgcactcaactcattctgtctgaggagaacagagaagtaaagtgtgtgtgggtttgattgactggagtggagatcatctgtgtatatcagtgtcatataagagcatcaagAGGTCATGAGACTTGgtttggatataatgctcagtcTTGGAGTTTGTTTTGGTCGTCTTCCAGTTTCTTATTCATTCAGAATGATACAGAGACTCGTCTCCCTGTACAGCCACtaagcaggagaataggagtgtttgtggatcacagtgcaggaactctgatcttctacaacatcagTGAAGACACagtgagcctcatccactcagtccagaccacattcactgagccgctctgccctgggtttacTGTTTATCGCGAatcatcagtcaaactgctgaaGACTGAGAGACAGAAGAGAGATTTACCCATAACCCTCCGCAGAATCAGTCAGTAACAGTGAGATTTTCTGTGGACtcttctgtgtatgtgtgtgagagagagtgta
>TCONS_00055870
TCAGCTGCTGATCTATTCCTGCATTCAGCTGAATTATGAAGGCTGATCAATGACTGGAGATTTGTGATTGTTCATCAGTTTCTTATAGAGTTTCTGCTGGAGATCAAACTCTTCAGGTCCATCATGGAGGACAAACACACACCTGGAGATCTGGATTTGTCTACAGGATGCAGttcagttcatcagaacagagcagaagcagagcccagctgtgtgtctatgaagagtgacgtGTCTATGGATCCACCAACAAATTTTAAGAGTGGAAACACAggacctgctgtcagctCACGTAAGaggaagagagcagaagcagagcccagctgtgtgtctatgaagagtgacgcaTCTATGGATCCACCATTAAAATTTAAGAGTAAAAACACACaacctgctgtcagtgtggatAGAGATGATCAGTCTGGAGACCTGCTgcaggattcactccaaccagaacatgatgaacttcagagagtcaaagagcagcacaaaaccacCATGAAGAACAAgcatgagagattatttgagggaatcaaccatggagagactcaaaccctcctgaacaggatctacacacagctctacatcatagaaggagagagtgaaggagtgaatgaagaacatgaggttatacagatggagaaaagagccagaacaaaaccctcacaacacactccagtctactgcaatgacatctttaaagcctcagctggagcaggacatgaggtGAAGATCAAaaaggagaaagcccagatcaagactgttctcactaaaggcatcgctggaatcgggaaaaccgtctctgtgcagaagttcattctggactgggccgagggaaaagccaatcaggatgtagatttcatgtttgtgcttccatttcgagaacTGAACTTGATccgagatcatcagtacagtcttcacagacttctgctggactttcatcctgaacttgaagatctggagcccaagatttatgagcagtgtagagttgtgttcatctttgatggtctggatgaaagcagaatcacactcaacttttcagatgaggagaaagtttgtgctgtgactgaatcttcatcagtggctgtgttgatgtggagtctcctgaaaggagatctgcttccctctgctctcatctggatcacctccagaccagctgcagcccatcagatcccctccagatacatcaagcgtctgacagaaattcagggattcactgagcctcagaaggaggaatatttcaggaagagaatcagtgatgagcatcaagccagcagaatcatctctcacataagaagagcaagaagcctccagatcatgtgccacatacccgtcttctgctggatctcctccactgtgcttcagaagctcctggaagaagatgtgagtgcagaaatccctcaaactctgactgagatgtacatccacttcctgctgattcagatcaacatgaggaagcagaagtatgaagagagagatccagagaaactcctgcagtccaacagaggagtgatcctcaaacttgctgaagtggctttcagacagctgatgaagggcaatgtgatgttctatgaggaggacctgattgagagcggcatagacgtcactgacgccttggtgtattctgggatctgcactgagatcttcaaggaggaatctgtgattcagcagaggaaagtctacagcttcatccatctcagctttcaggagtttctggctgctttctttgtgttttactgccatttaacaaAGAAGAGAGAACTGCTGGAGTTGATTTTAGGATATTCATATGATCAATATCTACAGTCCAGCTCTGAGAAGTCTCTGTAtgatctgctcagttcagcagTAGATGAAGCTGTCaggagtagtaatggtcatctggatctgttcctgcggttcctgctgggcgtctcactggagtccaatcagagactcttccaggatctgctgacacacacagaggagagctcagagagcatcaggagaatcacacagtacattaaagaccAGATCAAGAGCGATGACTATTTCAAGAGAGCAGCTGAAAGAttcatcaatctgttcctctgtctgctggaggtgaaagatcagactctggccagagagattcaggagtttgtgaaatcagacaaacactcagaggaggaactctctcctgctcactgctcaacaatctcctacatgattgagatgtcagaggagccgctggatgagttTGAGCTGCAGAAATTCAACACATCAGCTGAGGGAAGACTGAGACTGACAacagctgtgagaaactgcagaagagctctactacagtggtgtaatctcactgttcagtgctgtgagagtttgtcttcagctctacaatcctcaaactgtgtgctgagagagctggacctgagtaacaatgacctgcaggattcaggagtgaagaagctctctgatggactgaagagtcaacactgtaaactggagacactgagACTACAGAGCTGTAAACTCACTgttgagtgctgtgagagtttgtcttcagctctacaatcctcaaactgtgtgctgagagagctggacctgagtaacaatgacctgcaggattcaggagtgaagcttctctctgatggactgaagagtcaacactgtaaactggagacgctgagactggtcatgtgtaatctcactgttcagtgctgtgagagtttgtcttcagctctacaatcctcaaactgtgtgctgagagagctggacctgagtaacaatgacctgcaggattcaggagtgaagaagctctctgatggactgaagagtcaacactgtaaactggacacactgagattggccatgtgtaaactcactgttcagtgttgtgagagtttgtcttcagctctacaatcctcaaactgtgtgctgagagagctggacctgagtaacaatgacctgcaggattcaggagtgaagaagctctctgatggactgaagagtcaactctgtaaactggagacactgagattgtctggctgtatggtgacagaggaaggctgtggttttctgtcttcagctctgacttcaaacccctcacacctgagagagctggatctgagctacaatcatccaggagattcaggagtcaagctgctctctgaacaactggaggatccaaactacacactggacaaactcaatctggatcatggaggagagaagaggattacagcaggactgcacaaatatgtctgtttcctcactctggatccaaacacagcacacactcaactcattctgtctgaggagaacagagaggtgtcCCGAATgggagagaatcagccgtatcctgatcatccagacagatttgatgtctggtctcaggtgttgtgcagagagagtgtgtgtggacgctgttactgggagattgactggagtggagatggtggtgtgtttatatcagtgtcatataagagcatcagtaGGAAGGGAGTAGGTGTTAAGTGTGCgtttggatataatgctcagtcctggagtttgatctgTGATTCCTCTAGtttcatattcagtcacaataacacacacactgatctcccagtgaagccgcTCAGCAGTAGAATAGGAGTGCTtttggatcacagtgcaggaactctgatcttctacaacatttatagagacacaatgagcctcatccactcatttcagaccacattcactgagcagCTCTGCCCTGGGTTTAGGCCTAGTTCTGGaacatcagtgaaactgagctgaagactgacgagagatttacccagaatcctctgcaggagcagtcagcagcagtgtgcttgtgtgtgtgcacgtgtgtgtgtgtttgcgcgtaagagagagagagagagagagagtgtgtgtgtgtgtgtcagtcttcatcagtgtcatcattgatgtttatgaagtgtcctccaggatgctgctgtgttcagatcagctcattcttgtctacagattgatcttcttcattgtttctctgttgcttgagcacaaataataaaagtcaatgtcaaatccactgctgatattagaatgtgatgatgaacatggaaatgtctgaatcctgtctgaatctttgtcaaatcttgaatcaactgtagagaaatctagcagctcaatgaataaaggagaaatgaagtgtga
>TCONS_00055871
TCAGCTGCTGATCTATTCCTGCATTCAGCTGAATTATGAAGGCTGATCAATGACTGGAGATTTGTGATTGTTCATCAGTTTCTTATAGAGTTTCTGCTGGAGATCAAACTCTTCAGGTCCATCATGGAGGACAAACACACACCTGGAGATCTGGATTTGTCTACAGGATGCAGttcagttcatcagaacagagcagaagcagagcccagctgtgtgtctatgaagagtgacgtGTCTATGGATCCACCAACAAATTTTAAGAGTGGAAACACAggacctgctgtcagctCACGTAAGaggaagagagcagaagcagagcccagctgtgtgtctatgaagagtgacgcaTCTATGGATCCACCATTAAAATTTAAGAGTAAAAACACACaacctgctgtcagtgtggatAGAGATGATCAGTCTGGAGACCTGCTgcaggattcactccaaccagaacatgatgaacttcagagagtcaaagagcagcacaaaaccacCATGAAGAACAAgcatgagagattatttgagggaatcaaccatggagagactcaaaccctcctgaacaggatctacacacagctctacatcatagaaggagagagtgaaggagtgaatgaagaacatgaggttatacagatggagaaaagagccagaacaaaaccctcacaacacactccagtctactgcaatgacatctttaaagcctcagctggagcaggacatgaggtGAAGATCAAaaaggagaaagcccagatcaagactgttctcactaaaggcatcgctggaatcgggaaaaccgtctctgtgcagaagttcattctggactgggccgagggaaaagccaatcaggatgtagatttcatgtttgtgcttccatttcgagaacTGAACTTGATccgagatcatcagtacagtcttcacagacttctgctggactttcatcctgaacttgaagatctggagcccaagatttatgagcagtgtagagttgtgttcatctttgatggtctggatgaaagcagaatcacactcaacttttcagatgaggagaaagtttgtgctgtgactgaatcttcatcagtggctgtgttgatgtggagtctcctgaaaggagatctgcttccctctgctctcatctggatcacctccagaccagctgcagcccatcagatcccctccagatacatcaagcgtctgacagaaattcagggattcactgagcctcagaaggaggaatatttcaggaagagaatcagtgatgagcatcaagccagcagaatcatctctcacataagaagagcaagaagcctccagatcatgtgccacatacccgtcttctgctggatctcctccactgtgcttcagaagctcctggaagaagatgtgagtgcagaaatccctcaaactctgactgagatgtacatccacttcctgctgattcagatcaacatgaggaagcagaagtatgaagagagagatccagagaaactcctgcagtccaacagaggagtgatcctcaaacttgctgaagtggctttcagacagctgatgaagggcaatgtgatgttctatgaggaggacctgattgagagcggcatagacgtcactgacgccttggtgtattctgggatctgcactgagatcttcaaggaggaatctgtgattcagcagaggaaagtctacagcttcatccatctcagctttcaggagtttctggctgctttctttgtgttttactgccatttaacaaAGAAGAGAGAACTGCTGGAGTTGATTTTAGGATATTCATATGATCAATATCTACAGTCCAGCTCTGAGAAGTCTCTGTAtgatctgctcagttcagcagTAGATGAAGCTGTCaggagtagtaatggtcatctggatctgttcctgcggttcctgctgggcgtctcactggagtccaatcagagactcttccaggatctgctgacacacacagaggagagctcagagagcatcaggagaatcacacagtacattaaagaccAGATCAAGAGCGATGACTATTTCAAGAGAGCAGCTGAAAGAttcatcaatctgttcctctgtctgctggaggtgaaagatcagactctggccagagagattcaggagtttgtgaaatcagacaaacactcagaggaggaactctctcctgctcactgctcaacaatctcctacatgattgagatgtcagaggagccgctggatgagttTGAGCTGCAGAAATTCAACACATCAGCTGAGGGAAGACTGAGACTGACAacagctgtgagaaactgcagaagagctctgtga

Function

symbol description
si:ch211-22k7.9 Predicted to be involved in intracellular signal transduction.

GO:

id name namespace
GO:0035556 intracellular signal transduction biological_process
GO:0005524 ATP binding molecular_function
GO:0000166 nucleotide binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-070424-160 Predicted to be involved in intracellular signal transduction.

Ensembl:

ensembl_id ENSDARG00000088870

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00055868 False 955 mRNA 0.45 3 30145984 30153910
TCONS_00055869 False 959 mRNA 0.45 3 30145984 30154626
TCONS_00055870 False 4143 mRNA 0.46 11 30147796 30174588
TCONS_00055871 True 2301 mRNA 0.46 4 30169227 30174588

Neighbor

gene id symbol gene type direction distance location
XLOC_028844 NA coding downstream 4867 30104185 ~ 30141117 (-)
XLOC_028843 si:rp71-7l19.2 coding downstream 88376 30045493 ~ 30057608 (-)
XLOC_028842 NA coding downstream 178850 29965278 ~ 29967134 (-)
XLOC_028841 si:ch211-231i17.4 coding downstream 312658 29828668 ~ 29833326 (-)
XLOC_028840 NA coding downstream 324284 29821320 ~ 29821700 (-)
XLOC_028846 si:dkey-265e15.2 coding upstream 34602 30209190 ~ 30249797 (-)
XLOC_028847 si:dkey-233e3.3 coding upstream 87811 30262399 ~ 30269748 (-)
XLOC_028848 NA coding upstream 141215 30315803 ~ 30319511 (-)
XLOC_028849 znf1047 coding upstream 174088 30348676 ~ 30349370 (-)
XLOC_028850 znf1083 coding upstream 179465 30354053 ~ 30362840 (-)
XLOC_028836 NA non-coding downstream 438765 29705193 ~ 29707219 (-)
XLOC_028834 NA non-coding downstream 881530 29261963 ~ 29264454 (-)
XLOC_028851 CR383668.2 non-coding upstream 189174 30363762 ~ 30364502 (-)
XLOC_028852 NA non-coding upstream 231266 30405854 ~ 30407827 (-)
XLOC_028856 NA non-coding upstream 366411 30540999 ~ 30546286 (-)
XLOC_028857 NA non-coding upstream 402888 30577476 ~ 30581395 (-)

Expression


Co-expression Network