XLOC_028846 (si:dkey-265e15.2)


Basic Information

Item Value
gene id XLOC_028846
gene name si:dkey-265e15.2
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007115.7
NCBI id CM002888.2
chromosome length 78093715
location 30209190 ~ 30249797 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00055872
TCAACAGTTCAGCGGAGGAACAGAAAGATCTGCAGCCATTATTTGAGCTGTGACTGAGTGAAGCACGATGGCCAATGCTAAACAGCTGCTCAAGAACTCACTGGATGAACTGGTAGACGCTGAACTAAAGGAATTTCAGTGGTATTTAATAAATGACCATAGAGATATTTCAAAAGCTGAAATGGAGAATGCAGACAGGTTGAAGACAGTGGATAAGATGGTGTCATGTTTTGGACCAAAAGGAGCTGTGAAGACCACAGTAGACATCCTGAGGAAAATAAACCAGAATGAGTTGGCTGAAGAGCTGGAAAATAAACATAAGCAAGgtgcagttttAGAGACCTGTAAATCTCCTCCTTTTGATTACACAAACACCAGCCGTGAACtaaagaaaaaattaaaggagGACTATGAGAAGATATTGGTTGGTAATTCACAGACGGGTCATAAGAAGTACCTGGAGGATATTTATACTGATCTATATGTGGTGGAGAATGAGACTGGAGGAAGAGAGAGACAGCATGAGGTGATACAGATGGAGTCAAAACACAACCAACAGGATAGACCACTCAAGTGCAATGACATGTTTAAAGTTCAGCCTGACACAGGTCGAAAACACAGAAGAGTCCTGACACTGGGGATCGCAGGGGTGGGAAAAACTGTGTCTGTCAATAAATTCATCCTTGACTGGGCTGATGGAAAAGACAATCAGGAAATAGTCTTCATATTTCCACTGCCATTCCGTAGACTGAATctgattaaagaaaaaaagtaCAGTCTCATAGGTCTGCTAAACAAGTACTTCTTTAGCAGTGGAGAACTGAGCTCTCTTCCTAAAAAACAAGGCAAGGtcatgttcatctttgatggactGGATGAATATCGCTTTAAATTGAACTTCAAAAAGGATGATGGATTTACAGATGTTAATAAGGAAATGACTGTGAGTGAGATAATAACAAATCTCTTAAAGAGACATCTGGTGCCCTCGTCCCTTATGTGGATCACATCCAGACCAGCAGCATCCAGTCTGATACCCCGAGACCTCATTGATCAGGTGACTGAGGTGCGAGGATTCAATGATGAACAGAAAGAGCATTACTTCATCAAAAACAGCAGTCCTGAGGTTGCTAGAAACATCATCGGCCACATCAAGAAATCCAGGAGTTTGTACATCATGTGCCACATTCCCGTCTTCTGCTTGGTCTCTCTCACTGTTCttcagcctctgctgggtcaagaGAGCAATGAAAAAACACCCACAACTCTCACAGAGATGTACATCAACTTCTTACTGTCTCAAaagcaacagatgaaagaaaaatacagaaatgatACTGAATCAGAAGCCAATGCCTGTTCTTTTGATGAAATTGTTCTGAAGCTTGGAAAACTGGCCTTTAAACAGCTGCAGAAAGGACAACTGATTTTCTACAAAACAGATCTGGAGAAGTGTGGGCTAGATGTCAGGCAAGGTTCTGTGTTCTCTGGATTATGTACTCGAATGTTTCAGGAGGAAAACCACTATTCAGGGGAACAGGTGTACAGTTTTGTTCATCTCAGCGTTCAGGAGTTTATTGCTGCTCTCTATGTGTTTTTCacttacaaaaacaaaaaggcaaatcTATTTCTTGATTCCTGGAAAAAGGAACTGAAATGGAAACTCTCTGAAAAGCCCCTGTTTAAACTTCATACAGCTGCAGTCAAGAAGACTTTACAAAGCAAGAATGGACACCTGGACCTTTTCCTCCGGTTCTTGATGGGTCTCTCTCTGGAGTCTAATCAGAGTGACATGAAGGAGCTTCTGCCATGGCTGAAGCTCAAAACTGACATGATCAAAGACACGACTGactatatcaaaaagaaaatcgAGGAGGAAAATTCAGCAGAGAGAACCATCAACCTCTtccactgtctgaatgaactgaatgaTGACTTTGTGGAGGAACTCCAGAAGAGTCTGAGCTCTGGAAATCTTACAGCACAGGATCTGTCCTCTGCTCAGTGGTCGGGTCTAGTTTTTGTGCTCCTGATGTCAGAAGAGATTCAAGAGAAGTTTGAACTGCAGAAATACAGAAGATCTGATGAAGCACTGATGAGACTGATACCAGTGGTCAAAAACACCACAAGAGCACTCCTACAATGCTGTAATCTCACTGCTCagtcttgtgagagtttgtcttcagctctacaatcctcaaactgtgtgctgagagagctggacctgagtaacaatgacctgcaggattcaggagtgaagcttctctctgatggactgaagagccCAAAGTGTAAACTGGAGATACTGAGattgtctggctgtatggtgacagaggaaggctgtggttttctgtcctcagctctgacttcaaacccctcacacctgagagagctggatctgagctacaattatccaggagattcaggagtcaagctgctctctgaacaactggaggatccaagctacacactggacaaactcaatctggatcatggaggagagaagTGGTTTACAGCGGGACTGCACAAATatgcctGTTTCCTCACACTGgctccaaacacagcacacattgAACTCAgactgtctgaggagaacagaagGGTGACCCGAGTGGGAGAGAGACAAcagtatcctgatcatccagacagatttgatcatCATGCTCatgtgttgtgcagagagagtgtgtgtggacgctgttactgggagattgagaTGAATGCAGGAGATCGTGTGGATATagcagtgtcatataagagcatcaagAGGAAGGGACGAGGTTATGAGTGTGTGCTTGGACAAAATGCTCAGTCCTGGGCTTTAATCTGCTACGTTAACAGAGTCGCATTCAGACACAATATGATAGAGACTCGTCTCCCAGTAAAGTTGAtgagcaggagaataggagtgtttgtggatcacagtgcgggaactctgatcttctacaacatctatagagacacaatgagcctcatccactcagtccagaccacattcactgagccgctctatcCTGGGTTTTGGGTTGAGTATGGATCCTCGGTGAAACTGTGTTAAAGACTGATgggagatttacccagaatcctctgcaggatcAGTCAGTAGCAGTGAGATGATCTACAgtctcttctgtgtgtgtgtgtgtgtgtttctgttttcaTCAGTTATGATCATCTAATTTTGCCTCTACATCTGTATTCTGAgcgttcacacaca
>TCONS_00055873
TCAACAGTTCAGCGGAGGAACAGAAAGATCTGCAGCCATTATTTGAGCTGTGACTGAGTGAAGCACGATGGCCAATGCTAAACAGCTGCTCAAGAACTCACTGGATGAACTGGTAGACGCTGAACTAAAGGAATTTCAGTGGTATTTAATAAATGACCATAGAGATATTTCAAAAGCTGAAATGGAGAATGCAGACAGGTTGAAGACAGTGGATAAGATGGTGTCATGTTTTGGACCAAAAGGAGCTGTGAAGACCACAGTAGACATCCTGAGGAAAATAAACCAGAATGAGTTGGCTGAAGAGCTGGAAAATAAACATAAGCAAGgtgcagttttAGAGACCTGTAAATCTCCTCCTTTTGATTACACAAACACCAGCCGTGAACtaaagaaaaaattaaaggagGACTATGAGAAGATATTGGTTGGTAATTCACAGACGGGTCATAAGAAGTACCTGGAGGATATTTATACTGATCTATATGTGGTGGAGAATGAGACTGGAGGAAGAGAGAGACAGCATGAGGTGATACAGATGGAGTCAAAACACAACCAACAGGATAGACCACTCAAGTGCAATGACATGTTTAAAGTTCAGCCTGACACAGGTCGAAAACACAGAAGAGTCCTGACACTGGGGATCGCAGGGGTGGGAAAAACTGTGTCTGTCAATAAATTCATCCTTGACTGGGCTGATGGAAAAGACAATCAGGAAATAGTCTTCATATTTCCACTGCCATTCCGTAGACTGAATctgattaaagaaaaaaagtaCAGTCTCATAGGTCTGCTAAACAAGTACTTCTTTAGCAGTGGAGAACTGAGCTCTCTTCCTAAAAAACAAGGCAAGGtcatgttcatctttgatggactGGATGAATATCGCTTTAAATTGAACTTCAAAAAGGATGATGGATTTACAGATGTTAATAAGGAAATGACTGTGAGTGAGATAATAACAAATCTCTTAAAGAGACATCTGGTGCCCTCGTCCCTTATGTGGATCACATCCAGACCAGCAGCATCCAGTCTGATACCCCGAGACCTCATTGATCAGGTGACTGAGGTGCGAGGATTCAATGATGAACAGAAAGAGCATTACTTCATCAAAAACAGCAGTCCTGAGGTTGCTAGAAACATCATCGGCCACATCAAGAAATCCAGGAGTTTGTACATCATGTGCCACATTCCCGTCTTCTGCTTGGTCTCTCTCACTGTTCttcagcctctgctgggtcaagaGAGCAATGAAAAAACACCCACAACTCTCACAGAGATGTACATCAACTTCTTACTGTCTCAAaagcaacagatgaaagaaaaatacagaaatgatACTGAATCAGAAGCCAATGCCTGTTCTTTTGATGAAATTGTTCTGAAGCTTGGAAAACTGGCCTTTAAACAGCTGCAGAAAGGACAACTGATTTTCTACAAAACAGATCTGGAGAAGTGTGGGCTAGATGTCAGGCAAGGTTCTGTGTTCTCTGGATTATGTACTCGAATGTTTCAGGAGGAAAACCACTATTCAGGGGAACAGGTGTACAGTTTTGTTCATCTCAGCGTTCAGGAGTTTATTGCTGCTCTCTATGTGTTTTTCacttacaaaaacaaaaaggcaaatcTATTTCTTGATTCCTGGAAAAAGGAACTGAAATGGAAACTCTCTGAAAAGCCCCTGTTTAAACTTCATACAGCTGCAGTCAAGAAGACTTTACAAAGCAAGAATGGACACCTGGACCTTTTCCTCCGGTTCTTGATGGGTCTCTCTCTGGAGTCTAATCAGAGTGACATGAAGGAGCTTCTGCCATGGCTGAAGCTCAAAACTGACATGATCAAAGACACGACTGactatatcaaaaagaaaatcgAGGAGGAAAATTCAGCAGAGAGAACCATCAACCTCTtccactgtctgaatgaactgaatgaTGACTTTGTGGAGGAACTCCAGAAGAGTCTGAGCTCTGGAAATCTTACAGCACAGGATCTGTCCTCTGCTCAGTGGTCGGGTCTAGTTTTTGTGCTCCTGATGTCAGAAGAGATTCAAGAGAAGTTTGAACTGCAGAAATACAGAAGATCTGATGAAGCACTGATGAGACTGATACCAGTGGTCAAAAACACCACAAGAGCACTGTAAGAGTTTTCTGTATACACGTATGCCCGTTTCACACATTGATTTGAGTTATATTCATGCAGTGCAAAAACAGCACAGACTTTTTGTGcttttacataaaatatgtattacTGATTACCTGCTGTATACATTATCAGTTCTCCTTATATACTTCATTATCAGACATTCTTATCAATACTTTCCTAATTTTGTTTTAAACCATACAATAATATAATCTTCCCTGAAcacatttaaatgattaactatagaCGGTGTGCACTTCAAAACTGGGAAgggaaattaaataattgatttaaagtTTTTATAAATGATAACTAATGATTAATTATCACACAATTGTcaactaaaaaataattttatgtttattttgtaaa
>TCONS_00055874
AGTTCAGCGGAGGAACAGAAAGATCTGCAGCCATTATTTGAGAACTTCTAGAAATGGCTTCAAGGAGAGGAGAGGAAGTGGGAAGAGGAAATGTGAGACACCCGCAGTATGCAGCTTTACTGTAGTCTGTAACTCGCCATAAAGGAGAAGAGGAGAAGTATGGTGTCTTTGCTATTTTCTCCGTGTCCAGTGTTTCTACTGCTTCAGCTGTGACTGAGTGAAGCACGATGGCCAATGCTAAACAGCTGCTCAAGAACTCACTGGATGAACTGGTAGACGCTGAACTAAAGGAATTTCAGTGGTATTTAATAAATGACCATAGAGATATTTCAAAAGCTGAAATGGAGAATGCAGACAGGTTGAAGACAGTGGATAAGATGGTGTCATGTTTTG

Function

symbol description
si:dkey-265e15.2 Predicted to be involved in intracellular signal transduction.

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDARG00000089582

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00055872 False 3217 mRNA 0.43 7 30209190 30249797
TCONS_00055873 False 2511 mRNA 0.40 3 30222683 30249797
TCONS_00055874 True 393 mRNA 0.43 3 30226157 30249792

Neighbor

gene id symbol gene type direction distance location
XLOC_028845 si:ch211-22k7.9 coding downstream 34602 30145984 ~ 30174588 (-)
XLOC_028844 NA coding downstream 68073 30104185 ~ 30141117 (-)
XLOC_028843 si:rp71-7l19.2 coding downstream 151582 30045493 ~ 30057608 (-)
XLOC_028842 NA coding downstream 242056 29965278 ~ 29967134 (-)
XLOC_028841 si:ch211-231i17.4 coding downstream 375864 29828668 ~ 29833326 (-)
XLOC_028847 si:dkey-233e3.3 coding upstream 12602 30262399 ~ 30269748 (-)
XLOC_028848 NA coding upstream 66006 30315803 ~ 30319511 (-)
XLOC_028849 znf1047 coding upstream 98879 30348676 ~ 30349370 (-)
XLOC_028850 znf1083 coding upstream 104256 30354053 ~ 30362840 (-)
XLOC_028851 CR383668.2 coding upstream 113965 30363762 ~ 30364502 (-)
XLOC_028840 NA non-coding downstream 387490 29821320 ~ 29821700 (-)
XLOC_028836 NA non-coding downstream 501971 29705193 ~ 29707219 (-)
XLOC_028834 NA non-coding downstream 944736 29261963 ~ 29264454 (-)
XLOC_028852 NA non-coding upstream 156057 30405854 ~ 30407827 (-)
XLOC_028856 NA non-coding upstream 291202 30540999 ~ 30546286 (-)
XLOC_028857 NA non-coding upstream 327679 30577476 ~ 30581395 (-)

Expression


Co-expression Network