XLOC_028848


Basic Information

Item Value
gene id XLOC_028848
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007115.7
NCBI id CM002888.2
chromosome length 78093715
location 30315803 ~ 30319511 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00058239
aaaatgttttgttgcattcatgtcatgtgtgcaactttttgtccatgtgtttcttGAGCTGTGCCAAATAAGCAAAACTCTGTAAACACTGATaagatctgtacggtttctctccactgTGAATCCTCTACTGTTTTGagatgtgttaactgattaaacctcttgtcacactgtgaacacttgtacggtctctccagtgtgaatcgtctggtgcagtttcaattttggatctgtaataaaagtcttcttacACACAatgcacatatactctttcacaccagtgtggatcttcatgtgttcattaaggtttgctgatcggttgaaactctttccacactgagttcatgtgaatggtttctctccagtgtgggtcatCATAtgtttattaaagggccatgaaacccccctgtttcagcaggatTTTTCAAACCTCTAGTttaaaaaagtcaggaaagtggatGTGTCTAGCTACTTTTAGGTGGGAGTGTAGGGGGAGGGAAAGAGagaaggatttgaataaaaatgggagtttgcatttgggcacgcgctgattttcaccgaGGCAAAACAAACAGATGCAGACGCAGGTGAGAAAGACAGTGAcggtttacatggacatctgtgaCTGACTGTTTTATGacagtggaatgtttgataccgcacattgtataagagaaaaaaaaactgcatttctctgtaactgaGATGCACTCAGTAGGTCAGAAAGCTGTGCGTGTATCAGTGTCTACAGAGTGCGTGTAGTCCTGTCAAAAAACacgtttacatgtttacactcagagagcagcatttacagcaaatcttttagtccataatattgtagtgatattaacgtactgtctTTAAACAATTCCTcttctcccacttgttttggcaacccaactagtcgtctctctgccgtctgaataCTGTTTCAGGTAaaacagtcttcaaagctatcatgcatattaatgaagttgcaccgcatacacaatagagcgcactgattggtttgaacaaagtctttctcatgaatgaatTCAGTACACTCAGAGACAACATGAaatactcccaggtacagacagacagtctacatgctggaatagaCGCAAGGAAGTTTATGGgtagaaaagtccagtgtgaccgcggcttaagtgcatgtgaatggtttctttccagtgtggatcttcatgtgttgattaaggtatgatgagcggctgaaactcttcccacactgagtgcatgtgaatggtttctctccagtgtgggtcttcatgtgttgattaaggtttgatgattggctgaaactcttcccacactgagtgcatttgaatggtttctctccagagtgTATTCTCATGTGGTGAtcaaggtgtgatgattggctgaaactcttcccacactgagtgcatttgaatggtttctctccagtgtggatcatcatgtgtagatttaagtttgatgatttgctgaaactcttcccacactgagtgcatgtgaatggtttctctccagagtggattctcatgtggtgattaaggtgtgatgataggctgaaactttttccacactgagtgcatttgaatggtttctctccagtgtggatcctcatgtgtacattaaagtttgatgatttgctgaaactcttcccacactgagggcatgtgaatggtttctctccagtgtggatcctcatgtgttgattaaggtatgatgagcggctgaaactcttccaacattgagtgcatgtgaatggtttctctccagtgtggattctcatgtggtTATTAAAGtgtgatgatttgctgaaactcttcccacactgggtgcatgtgaatggtttctctccagtgtggatcctcatgtgatgtTTAAGGTGTGATAAGcagctaaaactcttcccacactgagtacatgtgaatggtttctctccagtgtggatcctcatgtgttgattaagggatgatgagtagcaaaaactcttcccacactgagtgcatgtgaatggtttctctccagtgtggaccctcatgtggtaattaagGTGTGATGAggtgctgaaactcttcccacactgagtgcatgtgaatggtttctctccagtgtggatcatcatgtgtcgattaagggatgataataggctgaaactcttcccacattgagtgcatgtgaatggtttctctccagtgtggatcctcatgtgtagattacggGACGACGataagctgaaactcttcccacagtgagggcatgtgaatggtttctctccagtgtggatcatcatgtgtagattaaggtgtgatgattggctgaaactcttcccacactgagtgcatgtgaatggtttctctccagtgtggatcatcatgtgaatcttaagattgccttttcttccaaaactctttccacactgagtgcaggtgaaacgattcttgtctctcctttttaaaataccatcagtctgtaaaaaaGTTtcttcctcaattttgacatgattttCCTCCTGTTTACTCCCCTcgttctcttcaattaggtctgaaataaaaaaaaaattaaacattagttttcattaagtcttaagtcatctttatttatctagtgcttttacaatgtaaattgtgtcaaagccacttaacagaagttgtagtaaatttgaactgtgtcagtccagttttcagagtttcttacataattgatcataaaagtcattttggtcatattgataagacacagatttgaaagctgtaaatggcctatttttattCCTATATATTcacaattacaacaaaatgttttcctaaaatgtgtaaagcaaacgctctggttactaaagtaacccacggaaatgctattagtggatttgattcAGAAAATCCACATATTgagaggattcggttcagaaggcacttgtctgaaagagtatggaatgggccaatgaatgccaatgaattggcagcgtaagcttgcgcagttgtgcttcattgccaattaacccAGCATATAAGTACAGGTGGAGCAAGCAGACGTTATCCTTTTTAGCTGAAGAGACTttgctaacagctaagggacagtcattatggcgatggtaaatagcatttccgttccgagggttactttagtaaccagagcgttccccttcgggtggggaactccaatgctattaatgaatttgatttagaaaatccacgtattgggagAACTGTGGacaacgccataatgactgcaccttaccaatgcctccgatgagaggatagtcaagcaagcgtgacgcacccacatcatgggaggcgcggtcctccaacgtgtccctggccctaacttatcccacttcaacagaagttttacggatttaggtATATTTTTTGGGTAGTCGTGAGCGtgtagataattctaggaaattatgacagtacgttgggaagcatgCAATCCTGATAGGTAGGATGCTGTGGAGGCCATCAGCTACCCAATGGGAGAGATAAGATGGCAagattacatatggactagccctaagaagggggagtgtGCATAAGAAAagggttagcgg

Function

GO:

id name namespace
GO:0019219 regulation of nucleobase-containing compound metabolic process biological_process
GO:0019222 regulation of metabolic process biological_process
GO:0016070 RNA metabolic process biological_process
GO:0080090 regulation of primary metabolic process biological_process
GO:0018130 heterocycle biosynthetic process biological_process
GO:0006351 transcription, DNA-templated biological_process
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0051171 regulation of nitrogen compound metabolic process biological_process
GO:0006366 transcription by RNA polymerase II biological_process
GO:0090304 nucleic acid metabolic process biological_process
GO:0003146 heart jogging biological_process
GO:0003154 BMP signaling pathway involved in determination of left/right symmetry biological_process
GO:0009059 macromolecule biosynthetic process biological_process
GO:2000223 regulation of BMP signaling pathway involved in heart jogging biological_process
GO:0009889 regulation of biosynthetic process biological_process
GO:0097659 nucleic acid-templated transcription biological_process
GO:0031323 regulation of cellular metabolic process biological_process
GO:0031326 regulation of cellular biosynthetic process biological_process
GO:1905330 regulation of morphogenesis of an epithelium biological_process
GO:0006139 nucleobase-containing compound metabolic process biological_process
GO:0051252 regulation of RNA metabolic process biological_process
GO:0006725 cellular aromatic compound metabolic process biological_process
GO:1901360 organic cyclic compound metabolic process biological_process
GO:1903506 regulation of nucleic acid-templated transcription biological_process
GO:1901362 organic cyclic compound biosynthetic process biological_process
GO:0010467 gene expression biological_process
GO:0010468 regulation of gene expression biological_process
GO:2000826 regulation of heart morphogenesis biological_process
GO:0048320 axial mesoderm formation biological_process
GO:0044271 cellular nitrogen compound biosynthetic process biological_process
GO:1900094 regulation of transcription from RNA polymerase II promoter involved in determination of left/right symmetry biological_process
GO:0060255 regulation of macromolecule metabolic process biological_process
GO:0050789 regulation of biological process biological_process
GO:0061311 cell surface receptor signaling pathway involved in heart development biological_process
GO:0050794 regulation of cellular process biological_process
GO:0061312 BMP signaling pathway involved in heart development biological_process
GO:2001141 regulation of RNA biosynthetic process biological_process
GO:0032774 RNA biosynthetic process biological_process
GO:0019438 aromatic compound biosynthetic process biological_process
GO:0010556 regulation of macromolecule biosynthetic process biological_process
GO:0034645 cellular macromolecule biosynthetic process biological_process
GO:0003303 BMP signaling pathway involved in heart jogging biological_process
GO:0034654 nucleobase-containing compound biosynthetic process biological_process
GO:2000112 regulation of cellular macromolecule biosynthetic process biological_process
GO:0046483 heterocycle metabolic process biological_process
GO:1901213 regulation of transcription from RNA polymerase II promoter involved in heart development biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0003677 DNA binding molecular_function
GO:0003690 double-stranded DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:0000976 transcription regulatory region sequence-specific DNA binding molecular_function
GO:0000977 RNA polymerase II transcription regulatory region sequence-specific DNA binding molecular_function
GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specific molecular_function
GO:0140110 transcription regulator activity molecular_function
GO:0001067 regulatory region nucleic acid binding molecular_function
GO:1990837 sequence-specific double-stranded DNA binding molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko03070 Bacterial secretion system
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00058239 True 3541 lncRNA 0.41 2 30315803 30319511

Neighbor

gene id symbol gene type direction distance location
XLOC_028847 si:dkey-233e3.3 coding downstream 46055 30262399 ~ 30269748 (-)
XLOC_028846 si:dkey-265e15.2 coding downstream 66006 30209190 ~ 30249797 (-)
XLOC_028845 si:ch211-22k7.9 coding downstream 141215 30145984 ~ 30174588 (-)
XLOC_028844 NA coding downstream 174686 30104185 ~ 30141117 (-)
XLOC_028843 si:rp71-7l19.2 coding downstream 258195 30045493 ~ 30057608 (-)
XLOC_028849 znf1047 coding upstream 29165 30348676 ~ 30349370 (-)
XLOC_028850 znf1083 coding upstream 34542 30354053 ~ 30362840 (-)
XLOC_028851 CR383668.2 coding upstream 44251 30363762 ~ 30364502 (-)
XLOC_028852 NA coding upstream 86343 30405854 ~ 30407827 (-)
XLOC_028853 znf1114 coding upstream 90239 30409750 ~ 30422325 (-)
XLOC_028842 NA non-coding downstream 348669 29965278 ~ 29967134 (-)
XLOC_028840 NA non-coding downstream 494103 29821320 ~ 29821700 (-)
XLOC_028836 NA non-coding downstream 608584 29705193 ~ 29707219 (-)
XLOC_028834 NA non-coding downstream 1051349 29261963 ~ 29264454 (-)
XLOC_028856 NA non-coding upstream 221488 30540999 ~ 30546286 (-)
XLOC_028857 NA non-coding upstream 257965 30577476 ~ 30581395 (-)
XLOC_028861 AL953856.3 non-coding upstream 635830 30955341 ~ 30955504 (-)

Expression


Co-expression Network