XLOC_028852



Basic Information


Item Value
gene id XLOC_028852
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information


Item Value
chromosome id NC_007115.7
NCBI id CM002888.2
chromosome length 78093715
location 30405854 ~ 30407827 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence


>TCONS_00058240
TGGACAGTGGTAGAGAGGTTAACAGATGAGCTTCTCCAACAAGAACTGTGCGCAGTCCCCCTGTCACTTGCCACGTCAGATTCAACACTCAGACTAACAAATCCATCTGTTGTGAGCATAGGCACCATCATTGATGGGATGGCCTTAGTAAGAGCAATCGTAAAACCTGTAAATGCATAATCTTTTGGAGATTATTCTGATATTTAAATGCAGATAGTGACTGGTTATCTACATAGGAACATTACTAGAGTTGATCTAGTGTTTGATCAGTACCAACAGAACTCCATAAATGGTGGAACAAGAGCAAAACGTAGCACTACCACCAACTATTTGTGGTTGGCACATGAAAGATGGTGTGCTGGTCCCCAAGCTTTTGACGAAAGAACCTTTACAGGCCAGATGTTTGAAGCTCATGATCTTTGGGTGCAAGGAAGGTGGAACTCACTGCAGTGTCAATGTCGAAAAAGTGGAATGTATTGTTGCAGAgcatgtggatgtgtgtgtgcagcttgGTGCAAGAATACTCGGGTACCTACATAATTATATTCGAATAGGTTTAGGTTTTGCCCTTTAGTGTGATCCAGGCGCTCTATTGTTAAAGTAAAAGCTTCCTCTTCTGTTATGTCCCTGTCCAGGACTCTGACTGAGTATTTGATCCCTGAATGCCTTCTAAAAGCTGGTCACCTTCCCATCTCTCTGTTGAGTATGACAGATTAGATAAGGGAAAAAGGTCACCAGCAGGGTTTAATGGAAATTACCATGCTTCCTAGGAAAAATTAATCAAGATTCTGTAATTTTGTGATTGTTATAATTAAACAAGAATCTTTTCTTAAATAGGTTGCctgaaatattttatgtcatTTCCAAACAACTACACAGTTACAGTATTACATCAAAAATATTAGCAGGTACTCCAAATTCTAGTAcaaaagaattctggcccagatttggcataaagctgggacaGCAGGCATTTAtttggcactggcatacagcattcGGGCCAAACATGGcttgggtttggcagaggtggcatcgtctttaaggcagcacacaagatttgggccagatgtaaaatgtagtatttggcccagattttaaaaattgaaatgtGGGCCaggtgagtttggccagtcttgacccacatttaaaatatattaaaataatttttgtgtagaaaaaaaaaaactgtacaaatcaGGTCATTTTGAGAAAAAAGCAGGCCCATAGTGTGTAGTGTGCCTAAAGTGCAAcacttcatgggtttatcaatttcattgcaattatGACACACCAACCAATCTGGCCCTGtgtatgagttattaacttggctgagacttggctcagatatagtctgtgtttgaCTCTTGTCTGgtagccagatttggtccagtcatgtaccataattTACTGCAgaatgtgggccaagcaaaacctgattgtgtgggccagagaaattttgtgATGTGGGAAGACTTGAGACAGGAGTTGAATTGGAAggaatttataaatgtaataatatgtaaaaaaataaatataattggtTTTAGAGCCAAGTACATGAAAAAGTAAAATAGGAGCAAAGACtatgatttaaaatgttaaatttccGCCTGGACATGAAAGTCCTAAAACTTGTGCAGTGTTCCACTGTCTTACACTACAAATTGTAAACTTGGCATGAATCATGCACCTATATAGTAGTACTTATGGAGTAAGGTTTTGAGCTAATATCTTATGTTTACAAGCTGATATTCATTTCAAAGTCTGTTTTTCTCtgaacatttacacacatccCATGAATGTAAGCTTTCATTTGATACCgacattatatttacattacattatatttgtgGTTTATGTAATTCCAGTAATATCTacatttactgtatgtgtgttgtgttgagcaaataaataacaaaaa

Function


GO:

id name namespace
GO:0044260 cellular macromolecule metabolic process biological_process
GO:0043170 macromolecule metabolic process biological_process
GO:0006807 nitrogen compound metabolic process biological_process
GO:0003676 nucleic acid binding molecular_function
GO:0003723 RNA binding molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA


RNA id representative length rna type GC content exon number start site end site
TCONS_00058240 True 1924 lncRNA 0.38 2 30405854 30407827

Neighbor


gene id symbol gene type direction distance location
XLOC_028851 CR383668.2 coding downstream 41352 30363762 ~ 30364502 (-)
XLOC_028850 znf1083 coding downstream 43014 30354053 ~ 30362840 (-)
XLOC_028849 znf1047 coding downstream 56484 30348676 ~ 30349370 (-)
XLOC_028848 NA coding downstream 86343 30315803 ~ 30319511 (-)
XLOC_028847 si:dkey-233e3.3 coding downstream 136106 30262399 ~ 30269748 (-)
XLOC_028853 znf1114 coding upstream 1923 30409750 ~ 30422325 (-)
XLOC_028854 si:dkey-199m13.5 coding upstream 20641 30428468 ~ 30440116 (-)
XLOC_028855 znf1052 coding upstream 113823 30521650 ~ 30528239 (-)
XLOC_028856 NA coding upstream 133172 30540999 ~ 30546286 (-)
XLOC_028857 NA coding upstream 169649 30577476 ~ 30581395 (-)
XLOC_028844 NA non-coding downstream 264737 30104185 ~ 30141117 (-)
XLOC_028842 NA non-coding downstream 438720 29965278 ~ 29967134 (-)
XLOC_028840 NA non-coding downstream 584154 29821320 ~ 29821700 (-)
XLOC_028861 AL953856.3 non-coding upstream 547514 30955341 ~ 30955504 (-)
XLOC_028862 AL953856.9 non-coding upstream 567089 30974916 ~ 30975079 (-)
XLOC_028863 AL953856.10 non-coding upstream 577529 30985356 ~ 30985519 (-)

Expression



Co-expression Network