XLOC_028854 (si:dkey-199m13.5)


Basic Information

Item Value
gene id XLOC_028854
gene name si:dkey-199m13.5
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007115.7
NCBI id CM002888.2
chromosome length 78093715
location 30428468 ~ 30440116 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00055880
aataaagtgtccaaacacagagagaaactcctgctgaagcgactgatctccacactgttataaagatggcgtttattaaagaggagagtgaagatgtgaagattgaagaaacattcacagtcaaacaggaagatctgcaggaacaaacagacttaATTGAAGAGAATAaggagagtaaagaggaggaacatcatatcaaaattgaggaaaaaactaatttacagactgatggtattttgaaaaggagagacaagaatcgtttaacctgcactcagtgtggaaagagttttggaaaacAAAGCAATCTTaaaattcacatgaggatccacactggagagaaaccatttacatgcactcagtgtgggaggagttttaactgctcatcacaccttaaactacacatgatgattcacactggagagaaaccattcacttgcactcagtgtgggaagagtttcatccgctcatcatcccttaatctacacatgaggatccacactggagagaaaccattcacatgcactcagtgtgggaagagtttcagctactcatcataccttaaacaacacataagaatccacactggagagaaaccattcgcatgcaccctgtgtgggaagagtttcagctgctcatcacacctttatcaccacatgaggatccacactggagagaaaccattctcatgtactcagtgtgggaagagtttcagccgctcatcatcccttaatcaacacatgaggatccacactggagagaaaccattcacatgcactcagtgtgggaagagtttcagccgtcCACCATACCTTAATTtacacatgatgagccacactggagagaaaccatttacttgcacttaaGCCGctgtcacactggacttttctccccatagacttccatttataagcACACATATGCGTCATATCGGAAATGGAAAATCGTGTgtcaagtttcacagttcactgcattgcaaagttcaagcttggtgaactctgacctgcgtaATCGCATTGGTTGAGtgagtgagaccaatcgaagatcaaaacatgacctctctggatagaaatgtaaaatatggaccaatcactcacttttttttaaatgtctaatcatcttgtttaatcccgccccttttcgcagtacCGTTCAACGGAATATCGCATGcataaactctagtgtgaccgcagcttcgttgtgggaagagtttcagtaactcctcagaccttaataatacataaagacccacactgaagagaaactattcacatgcactcaagtgtgggaagagtttaaACCGATCAGCAaatcttaataaacacatgaagatccacactggtgtgaaagactATATGTGctctgagtgtgagaagacttttattacaaacTGCACAAGACGTTTCACATTGGAGAGactgtacaagtgttcacactgtgacaaggtttaatcagttaacacatctgaaaacagaagagGATTCTCTGGAGAGAAACtgtacagatctgatcagtgtttACAGAATTTTACtcatttggtttaaaatgtttgaaaaggctgagtgatgatttactgttttccaacactcctacactgcagtaggtggggttgtaaatgttttGCACTCATTGCGTTTACCCTGAACACAATGATGGcggctgagagaagaacagtttcataaacatctggcaaagaGCACCTCTGCAGCTTaaaatctctttgcaagtgattgtacaggtgcgtATACATCTGTACTCCACTCTTCAGTCTATTCATGTAGCtggtgttgttttggatgatgttctctgtctgactccctgaatgagaaacaaatcactgggaAGACACCCTACATCAAAGAAGGTGGAGCTCCAGGACGGTTGGTTTGCAGTATACCAAGGCTTTACGTTTAGAAAGTCCATTCAATTGTCCTTTGTTGCATCTTTTATTACtaaagtttctttacttttaggttTAA

Function

symbol description
si:dkey-199m13.5 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription, DNA-templated.

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDARG00000098876

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00055880 True 1976 mRNA 0.41 2 30428468 30440116

Neighbor

gene id symbol gene type direction distance location
XLOC_028853 znf1114 coding downstream 6143 30409750 ~ 30422325 (-)
XLOC_028852 NA coding downstream 20641 30405854 ~ 30407827 (-)
XLOC_028851 CR383668.2 coding downstream 63966 30363762 ~ 30364502 (-)
XLOC_028850 znf1083 coding downstream 65628 30354053 ~ 30362840 (-)
XLOC_028849 znf1047 coding downstream 79098 30348676 ~ 30349370 (-)
XLOC_028855 znf1052 coding upstream 81534 30521650 ~ 30528239 (-)
XLOC_028856 NA coding upstream 100883 30540999 ~ 30546286 (-)
XLOC_028857 NA coding upstream 137360 30577476 ~ 30581395 (-)
XLOC_028858 si:dkey-16p19.5 coding upstream 267166 30707282 ~ 30712588 (-)
XLOC_028859 si:dkey-11n14.1 coding upstream 443896 30884012 ~ 31064584 (-)
XLOC_028848 NA non-coding downstream 108957 30315803 ~ 30319511 (-)
XLOC_028844 NA non-coding downstream 287351 30104185 ~ 30141117 (-)
XLOC_028842 NA non-coding downstream 461334 29965278 ~ 29967134 (-)
XLOC_028861 AL953856.3 non-coding upstream 515225 30955341 ~ 30955504 (-)
XLOC_028862 AL953856.9 non-coding upstream 534800 30974916 ~ 30975079 (-)
XLOC_028863 AL953856.10 non-coding upstream 545240 30985356 ~ 30985519 (-)

Expression


Co-expression Network