XLOC_028856


Basic Information

Item Value
gene id XLOC_028856
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007115.7
NCBI id CM002888.2
chromosome length 78093715
location 30540999 ~ 30546286 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00057363
atatatttgtatatatacatatttgtatatattgtatatatacatacaaaaaaatacaacttaCCAACTTGACCTTTCTCAACACCAGCTTTTCCAGTGAGCATGTCTGATGGAAATGAGCAAGAGGATGCTTGGGGGACCACACATTGAGCTATTGAGGTACAACAACCTTCATTAGAGCAAACACAGCAAATTAGTGTGTAATTAATAACATGGTAATGTTACATTTTCAGTACAATCCCTTAGAAGTCACAACCTCTGAACTGAAAACCTTAAGTACCCACCAGGCTAGAGCAAAGAGGACCTACCTACTGTGTTGAGCTGTGCAGAGGGCAATATTGGAGAAGCTTAATGAGCTGGACATGAAGATTAACCATCTAACTTCAGTGGTCCAGTCTCTTGCTTCGGTCAAGTGTTCAAATGGTGGTGGACATTGAGGATTACATCTTTCCTATTGAAACAATGGAAGACCTTGAACAACTGGAAAAGGCAATTAGCCGAAAATCCAATGATGGAAAAGATGatgaaCAGGTTATCCACTAGAGAAGGACAAACTCTAAAAATTTAGAGTTATGGCGTATTTGCTCCAAAGTGTTTGTTCCAGTAGCCAAACAGCTCAACTGGTGTGGAAGAAAAAAAGAGgactaaaaaacacaaatattgggACACTTGTGATAGGTGCAGCTGAGGAACCCTGTGTTTCCGTCTTCAACAGTGGCAgaaacagaaaacattttaaagacttCCTGCGCTTGGCCCCAAAAAGAATGGACTCTTAAACGACTTGCTCTCTTTAAAtgagttttgtttgtttctgaaaaatataaattataataaattataatataatataacataaaataatataatacaaaaaatagtataatataaaataatataatataatatagtataaaataataaaataaatatataatataaaataatataat
>TCONS_00057362
atatatttgtatatatacatatttgtatatattgtatatatacatacaaaaaaatacaacttaCCAACTTGACCTTTCTCAACACCAGCTTTTCCAGTGAGCATGTCTGATGGAAATGAGCAAGAGGATGCTTGGGGGACCACACATTGAGCTATTGAGTACAATCCCTTAGAAGTCACAACCTCTGAACTGAAAACCTTAAGTACCCACCAGGCTAGAGCAAAGAGGACCTACCTACTGTGTTGAGCTGTGCAGAGGGCAATATTGGAGAAGCTTAATGAGCTGGACATGAAGATTAACCATCTAACTTCAGTGGTCCAGTCTCTTGCTTCGGTCAAGTGTTCAAATGGTGGTGGACATTGAGGATTACATCTTTCCTATTGAAACAATGGAAGACCTTGAACAACTGGAAAAGGCAATTAGCCGAAAATCCAATGATGGAAAAGATGGTACGAATATTTAGGATTTTACAGCTGTTGTGAAGTAAATCATGTCTATTATATGGCCGGTTTCACAGACAACACTTAATTTGCACTAACATACCTTACAAAATCTCATTGCCATCGTTCTGTTATAAGATGCACTCCAGTATTGTTTTCTTGAATTTTTTCACATGCATttttataaaagcagttttaaaatcttacattaagACTTAGGCTCATCCCTGTCTGTAAAACTGGGCCATAATGCACTTTGACTGTAAAGATTTAAtatcatcttttatttttaagatgaaCAGGTTATCCACTAGAGAAGGACAAACTCTAAAAATTTAGAGTTATGGCGTATTTGCTCCAAAGTGTTTGTTCCAGTAGCCAAACAGCTCAACTGGTGTGGAAGAAAAAAAGAGgactaaaaaacacaaatattgggACACTTGTGATAGGTGCAGCTGAGGAACCCTGTGTTTCCGTCTTCAACAGTGGCAgaaacagaaaacattttaaagacttCCTGCGCTTGGCCCCAAAAAGAATGGACTCTTAAACGACTTGCTCTCTTTAAAtgagttttgtttgtttctgaaaaatataaattataataaattataatataatataacataaaataatataatacaaaaaatagtataatataaaataatataatataatatagtataaaataataaaataaatatataatataaaataatataat
>TCONS_00057364
AGGACACGTTTTCTATGCTGAGGGATTTCAAACGAGACAGAGCACCACATAAGTTGTTTGTCTCACTTCAGCTTTTCCAGTGAGCATGTCTGATGGAAATGAGCAAGAGGATGCTTGGGGGACCACACATTGAGCTATTGAGGTACAACAACCTTCATTAGAGCAAACACAGCAAATTAGTGTGTAATTAATAACATGGTAATGTTACATTTTCAGTACAATCCCTTAGAAGTCACAACCTCTGAACTGAAAACCTTAAGTACCCACCAGGCTAGAGCAAAGAGGACCTACCTACTGTGTTGAGCTGTGCAGAGGGCAATATTGGAGAAGCTTAATGAGCTGGACATGAAGATTAACCATCTAACTTCAGTGGTCCAGTCTCTTGCTTCGGTCAAGTGTTCAAATGGTGGTGGACATTGAGGATTACATCTTTCCTATTGAAACAATGGAAGACCTTGAACAACTGGAAAAGGCAATTAGCCGAAAATCCAATGATGGAAAAGATGGTACGAATATTTAGGATTTTACAGCTGTTGTGAAGTAAATCATGTCTATTATATGGCCGGTTTCACAGACAACACTTAATTTGCACTAACATACCTTACAAAATCTCATTGCCATCGTTCTGTTATAAGATGCACTCCAGTATTGTTTTCTTGAATTTTTTCACATGCATttttataaaagcagttttaaaatcttacattaagACTTAGGCTCATCCCTGTCTGTAAAACTGGGCCATAATGCACTTTGACTGTAAAGATTTAAtatcatcttttatttttaagatgaaCAGGTTATCCACTAGAGAAGGACAAACTCTAAAAATTTAGAGTTATGGCGTATTTGCTCCAAAGTGTTTGTTCCAGTAGCCAAACAGCTCAACTGGTGTGGAAGAAAAAAAGAGgactaaaaaacacaaatattgggACACTTGTGATAGGTGCAGCTGAGGAACCCTGTGTTTCCGTCTTCAACAGTGGCAgaaacagaaaacattttaaagacttCCTGCGCTTGGCCCCAAAAAGAATGGACTCTTAAACGACTTGCTCTCTTTAAAtgagttttgtttgtttctgaaaaatataaattataataaattataatataatataacataaaataatataatacaaaaaatagtataatataaaataatataatataatatagtataaaataataaaataaatatataatataaaataatataat

Function

GO:

id name namespace
GO:0007178 transmembrane receptor protein serine/threonine kinase signaling pathway biological_process
GO:0001704 formation of primary germ layer biological_process
GO:0001706 endoderm formation biological_process
GO:0019219 regulation of nucleobase-containing compound metabolic process biological_process
GO:0019220 regulation of phosphate metabolic process biological_process
GO:0019222 regulation of metabolic process biological_process
GO:0016070 RNA metabolic process biological_process
GO:0007492 endoderm development biological_process
GO:0080090 regulation of primary metabolic process biological_process
GO:0018130 heterocycle biosynthetic process biological_process
GO:0006351 transcription, DNA-templated biological_process
GO:0065007 biological regulation biological_process
GO:0007507 heart development biological_process
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0051171 regulation of nitrogen compound metabolic process biological_process
GO:0006366 transcription by RNA polymerase II biological_process
GO:0051174 regulation of phosphorus metabolic process biological_process
GO:0002030 inhibitory G protein-coupled receptor phosphorylation biological_process
GO:0060389 pathway-restricted SMAD protein phosphorylation biological_process
GO:0060393 regulation of pathway-restricted SMAD protein phosphorylation biological_process
GO:0060395 SMAD protein signal transduction biological_process
GO:0090304 nucleic acid metabolic process biological_process
GO:0002043 blood vessel endothelial cell proliferation involved in sprouting angiogenesis biological_process
GO:0009058 biosynthetic process biological_process
GO:0009059 macromolecule biosynthetic process biological_process
GO:1901576 organic substance biosynthetic process biological_process
GO:0009889 regulation of biosynthetic process biological_process
GO:0097659 nucleic acid-templated transcription biological_process
GO:0031323 regulation of cellular metabolic process biological_process
GO:0031326 regulation of cellular biosynthetic process biological_process
GO:0006139 nucleobase-containing compound metabolic process biological_process
GO:0030509 BMP signaling pathway biological_process
GO:0090092 regulation of transmembrane receptor protein serine/threonine kinase signaling pathway biological_process
GO:1903225 negative regulation of endodermal cell differentiation biological_process
GO:0060976 coronary vasculature development biological_process
GO:0090100 positive regulation of transmembrane receptor protein serine/threonine kinase signaling pathway biological_process
GO:0051252 regulation of RNA metabolic process biological_process
GO:0006725 cellular aromatic compound metabolic process biological_process
GO:0043951 negative regulation of cAMP-mediated signaling biological_process
GO:1901360 organic cyclic compound metabolic process biological_process
GO:1903506 regulation of nucleic acid-templated transcription biological_process
GO:1901362 organic cyclic compound biosynthetic process biological_process
GO:0010467 gene expression biological_process
GO:0044237 cellular metabolic process biological_process
GO:0006468 protein phosphorylation biological_process
GO:0010468 regulation of gene expression biological_process
GO:0044238 primary metabolic process biological_process
GO:1904323 regulation of inhibitory G protein-coupled receptor phosphorylation biological_process
GO:1904325 positive regulation of inhibitory G protein-coupled receptor phosphorylation biological_process
GO:0044249 cellular biosynthetic process biological_process
GO:0044260 cellular macromolecule metabolic process biological_process
GO:0051279 regulation of release of sequestered calcium ion into cytosol biological_process
GO:0051281 positive regulation of release of sequestered calcium ion into cytosol biological_process
GO:0044271 cellular nitrogen compound biosynthetic process biological_process
GO:0031399 regulation of protein modification process biological_process
GO:0031401 positive regulation of protein modification process biological_process
GO:0071704 organic substance metabolic process biological_process
GO:0021703 locus ceruleus development biological_process
GO:0060255 regulation of macromolecule metabolic process biological_process
GO:0043170 macromolecule metabolic process biological_process
GO:0010522 regulation of calcium ion transport into cytosol biological_process
GO:0010524 positive regulation of calcium ion transport into cytosol biological_process
GO:0050789 regulation of biological process biological_process
GO:0050794 regulation of cellular process biological_process
GO:0006807 nitrogen compound metabolic process biological_process
GO:2001141 regulation of RNA biosynthetic process biological_process
GO:0032774 RNA biosynthetic process biological_process
GO:0045937 positive regulation of phosphate metabolic process biological_process
GO:0042325 regulation of phosphorylation biological_process
GO:0042327 positive regulation of phosphorylation biological_process
GO:1903587 regulation of blood vessel endothelial cell proliferation involved in sprouting angiogenesis biological_process
GO:0034641 cellular nitrogen compound metabolic process biological_process
GO:1903589 positive regulation of blood vessel endothelial cell proliferation involved in sprouting angiogenesis biological_process
GO:0019438 aromatic compound biosynthetic process biological_process
GO:0010556 regulation of macromolecule biosynthetic process biological_process
GO:0034645 cellular macromolecule biosynthetic process biological_process
GO:0001932 regulation of protein phosphorylation biological_process
GO:0001934 positive regulation of protein phosphorylation biological_process
GO:0010562 positive regulation of phosphorus metabolic process biological_process
GO:0034654 nucleobase-containing compound biosynthetic process biological_process
GO:0035987 endodermal cell differentiation biological_process
GO:2000112 regulation of cellular macromolecule biosynthetic process biological_process
GO:0046483 heterocycle metabolic process biological_process
GO:0042664 negative regulation of endodermal cell fate specification biological_process
GO:0071772 response to BMP biological_process
GO:0071773 cellular response to BMP stimulus biological_process
GO:1904427 positive regulation of calcium ion transmembrane transport biological_process
GO:0007167 enzyme linked receptor protein signaling pathway biological_process
GO:0035479 angioblast cell migration from lateral mesoderm to midline biological_process
GO:0010862 positive regulation of pathway-restricted SMAD protein phosphorylation biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0046872 metal ion binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0003677 DNA binding molecular_function
GO:0060182 apelin receptor activity molecular_function
GO:0003690 double-stranded DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:0000976 transcription regulatory region sequence-specific DNA binding molecular_function
GO:0000977 RNA polymerase II transcription regulatory region sequence-specific DNA binding molecular_function
GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specific molecular_function
GO:0140110 transcription regulator activity molecular_function
GO:0043169 cation binding molecular_function
GO:0001067 regulatory region nucleic acid binding molecular_function
GO:1990837 sequence-specific double-stranded DNA binding molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00057363 False 953 lncRNA 0.34 4 30540999 30545416
TCONS_00057362 False 1164 lncRNA 0.33 4 30540999 30545416
TCONS_00057364 True 1221 lncRNA 0.35 4 30540999 30546286

Neighbor

gene id symbol gene type direction distance location
XLOC_028855 znf1052 coding downstream 12760 30521650 ~ 30528239 (-)
XLOC_028854 si:dkey-199m13.5 coding downstream 100883 30428468 ~ 30440116 (-)
XLOC_028853 znf1114 coding downstream 118674 30409750 ~ 30422325 (-)
XLOC_028852 NA coding downstream 133172 30405854 ~ 30407827 (-)
XLOC_028851 CR383668.2 coding downstream 176497 30363762 ~ 30364502 (-)
XLOC_028857 NA coding upstream 31190 30577476 ~ 30581395 (-)
XLOC_028858 si:dkey-16p19.5 coding upstream 160996 30707282 ~ 30712588 (-)
XLOC_028859 si:dkey-11n14.1 coding upstream 337726 30884012 ~ 31064584 (-)
XLOC_028860 znf1099 coding upstream 379257 30925543 ~ 30931296 (-)
XLOC_028861 AL953856.3 coding upstream 409055 30955341 ~ 30955504 (-)
XLOC_028848 NA non-coding downstream 221488 30315803 ~ 30319511 (-)
XLOC_028844 NA non-coding downstream 399882 30104185 ~ 30141117 (-)
XLOC_028842 NA non-coding downstream 573865 29965278 ~ 29967134 (-)
XLOC_028862 AL953856.9 non-coding upstream 428630 30974916 ~ 30975079 (-)
XLOC_028863 AL953856.10 non-coding upstream 439070 30985356 ~ 30985519 (-)
XLOC_028864 AL953856.7 non-coding upstream 445595 30991881 ~ 30992044 (-)

Expression


Co-expression Network