XLOC_028857


Basic Information

Item Value
gene id XLOC_028857
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007115.7
NCBI id CM002888.2
chromosome length 78093715
location 30577476 ~ 30581395 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00057365
gccggagcgtgagtgtggtatatatacacgagagctgatgagttgcacctggaccgtaatcagtgccaggtagcagggcttatgggattttgagtccgtgagtcgaatcagaattctggcgatggttccctctggtggtgcacaagagggttggcatcgccctcatttacaacacacactgaaaaaagtgatttTGGAGAGCGGTAAATATAATCTGTGGAAACCATATAAAATTTACTTGATTATTGCAGCCAGCCAAGGAATTCAAAAGTAATGGGTAAATTCTACATATGCTACCCATTCGTCAACAGTAACAACCATCACATAGAAAAATTCAGTAAAGTATACCCCCAAACCGTGAGTTTATTGCTTGAAATTGCGCATGCGTCAGCCCGCGTTTTTGAGTGAGTGTGGACGACGCTGGATCTTCTCACCGGCTGCCATGATCGAACTAACAGCAGAAATTAAGAGACCCACTGATAGACCGCTGTTACCAGTTCTAGAGCTGACACATCCACACACGTCCACATCACAAGTGTATCCTGTAAAGGTATGTAagttttccaaataaaataaatcacattgtCCTTAAAGGTCTTTAACGAAAGTCTTCAGTTATGGAAAAATGAAATGGAAAtgcaatttataaaataaattaaaaaatgaataaaaccttCTCTAGCCAAAGAATTGAAGTGGTCAGTCTCAGCCCCtcttttggtggttttaaaaaaaGGTATTATTCACTGAGGCTCAggtgaaaatgtttaaaatagattttaaataataatattttttctttcaacTAAGATACTTTCATGTGATATATATGAGATCTGGTTTgtgatttaaaataacatttttggtcCTTTTACTTCCTAGATCAAGGAGGAGCATCACAACAGTTTCGTTGAAGTAGACATTCTTGTGGAAGCTTGATGAGTACACACCAGGTTTTGCAGCTAATGCATGCCAAAGGAGGAGCAGCTAGTTGCAAGATGCATCCTCTGCTGGACAGTTtaaatACACAGAACATTGAGGAAAAAAGAGATGCTGTTGTCTGCTGCCTCAGTAACTACCTTGGGGAAAGACAAGAAGATATGTTCCATGACTGGCAGGAATGTGAGGAGTACACAGACAAAACGATGAAGGAGATTGTGGAGCACAATTTGTCTACAGTGATCGGGGGAAAACAAGTGATGGAAGGATGGGGAAGCCAGAGGCATGCATACTGCTGGGACTCATATGCAATTAACATTGAATATCCAAAGGAGCTGAAGAACACGTTTGAAGCTTTTCAAAAACTTTGTTTTAGAAAATGATGGGGCAAAACCACTGATGAAGGTCCACAGCCTCAAAAATAAGCTCATGCAGTAGACATTTCTCCTCTTATTTGAAGAGGATCTTTTGTTTGGACATGCCTTGATGGAGTTGTAATggagtgttttatatatttttttctcttccatCATTTGCttcacacacagacaaagacCCATCCACTGTCTCTCAGCCCTCTCCATTTCTCTACGTTTtcccccatattgacagaaaaggAATACTAAAAGAAAGTGGCCTAAAGAATTTTGATCTCACCTACCGTCTTTTCTTccccatttgtttgtttattttattctcatCCTATCTGCGAGAGTGAGAGTAAggacaaaaaataaagaattttgttttacttttatccGGATATTTGATACTGTACATGCACAAAAACAACcacaagtctgtgtgtgtgcttttggcTTTTAAAATAGAATAAGTGGCCTTTGAAGTTTTGTATGCAAGTAGCCAATTACCagaaaaaacttttgaaaatgagtatagtgagttataaaacaggtttatttgttcattgttgtGTGAAGCTGTTGTACTTTATTTAGTACTCTTTTCTGTGTTTTAATAATTTGGTGTCCTAAAACgggtatatgttttattattcaacATTATTGACACATTTGATAGATCAgtgagttataaaacaggtatatACTTGAAATGTTGTGTGAAGCTGTTGTGCTGCACTATATTTTGAGTGTGTTTTAGGATTTTTTTGAATAAAAC
>TCONS_00057366
gccggagcgtgagtgtggtatatatacacgagagctgatgagttgcacctggaccgtaatcagtgccaggtagcagggcttatgggattttgagtccgtgagtcgaatcagaattctggcgatggttccctctggtggtgcacaagagggttggcatcgccctcatttacaacacacactgaaaaaagtgatttTGGAGAGCGGTAAATATAATCTGTGGAAACCATATAAAATTTACTTGATTATTGCAGCCAGCCAAGGAATTCAAAAGTAATGGGTAAATTCTACATATGCTACCCATTCGTCAACAGTAACAACCATCACATAGAAAAATTCAGTAAAGTATACCCCCAAACCGTGAGTTTATTGCTTGAAATTGCGCATGCGTCAGCCCGCGTTTTTGAGTGAGTGTGGACGACGCTGGATCTTCTCACCGGCTGCCATGATCGAACTAACAGCAGAAATTAAGGCAGAGTCTGTATATGTGGACACTCACTATTTGCCCTCTCTACAGTTTCTCTTGTCTGTCCCCCACAAGCAGAGACCCACTGATAGACCGCTGTTACCAGTTCTAGAGCTGACACATCCACACACGTCCACATCACAAGTGTATCCTGTAAAGATCAAGGAGGAGCATCACAACAGTTTCGTTGAAGTAGACATTCTTGTGGAAGCTTGA

Function

GO:

id name namespace
GO:0044085 cellular component biogenesis biological_process
GO:0048729 tissue morphogenesis biological_process
GO:0016070 RNA metabolic process biological_process
GO:0016072 rRNA metabolic process biological_process
GO:0000027 ribosomal large subunit assembly biological_process
GO:0071826 ribonucleoprotein complex subunit organization biological_process
GO:0022613 ribonucleoprotein complex biogenesis biological_process
GO:0022618 ribonucleoprotein complex assembly biological_process
GO:0034470 ncRNA processing biological_process
GO:0006364 rRNA processing biological_process
GO:0048513 animal organ development biological_process
GO:0090304 nucleic acid metabolic process biological_process
GO:0071599 otic vesicle development biological_process
GO:0006396 RNA processing biological_process
GO:0006139 nucleobase-containing compound metabolic process biological_process
GO:0072175 epithelial tube formation biological_process
GO:0006725 cellular aromatic compound metabolic process biological_process
GO:1901360 organic cyclic compound metabolic process biological_process
GO:0010467 gene expression biological_process
GO:0044237 cellular metabolic process biological_process
GO:0044238 primary metabolic process biological_process
GO:0042254 ribosome biogenesis biological_process
GO:0042273 ribosomal large subunit biogenesis biological_process
GO:0048634 regulation of muscle organ development biological_process
GO:0048641 regulation of skeletal muscle tissue development biological_process
GO:0071704 organic substance metabolic process biological_process
GO:0043170 macromolecule metabolic process biological_process
GO:0035148 tube formation biological_process
GO:0006807 nitrogen compound metabolic process biological_process
GO:0010002 cardioblast differentiation biological_process
GO:0034641 cellular nitrogen compound metabolic process biological_process
GO:0034660 ncRNA metabolic process biological_process
GO:0046483 heterocycle metabolic process biological_process
GO:0071013 catalytic step 2 spliceosome cellular_component
GO:0030684 preribosome cellular_component
GO:0032040 small-subunit processome cellular_component
GO:1990904 ribonucleoprotein complex cellular_component
GO:0044428 obsolete nuclear part cellular_component
GO:0070013 intracellular organelle lumen cellular_component
GO:0005634 nucleus cellular_component
GO:0005685 U1 snRNP cellular_component
GO:0031974 membrane-enclosed lumen cellular_component
GO:0031981 nuclear lumen cellular_component
GO:0043227 membrane-bounded organelle cellular_component
GO:0043228 non-membrane-bounded organelle cellular_component
GO:0043231 intracellular membrane-bounded organelle cellular_component
GO:0043232 intracellular non-membrane-bounded organelle cellular_component
GO:0043233 organelle lumen cellular_component
GO:0005730 nucleolus cellular_component
GO:0005488 binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0030515 snoRNA binding molecular_function
GO:0097159 organic cyclic compound binding molecular_function
GO:1901363 heterocyclic compound binding molecular_function
GO:0003723 RNA binding molecular_function

KEGG:

id description
ko00230 Purine metabolism
ko00240 Pyrimidine metabolism
ko03020 RNA polymerase
ko03230 Viral genome structure
ko05164 Influenza A
ko05169 Epstein-Barr virus infection
ko05016 Huntington disease
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00057365 False 2079 lncRNA 0.38 4 30577476 30581395
TCONS_00057366 True 679 lncRNA 0.45 3 30579097 30581395

Neighbor

gene id symbol gene type direction distance location
XLOC_028856 NA coding downstream 31190 30540999 ~ 30546286 (-)
XLOC_028855 znf1052 coding downstream 49237 30521650 ~ 30528239 (-)
XLOC_028854 si:dkey-199m13.5 coding downstream 137360 30428468 ~ 30440116 (-)
XLOC_028853 znf1114 coding downstream 155151 30409750 ~ 30422325 (-)
XLOC_028852 NA coding downstream 169649 30405854 ~ 30407827 (-)
XLOC_028858 si:dkey-16p19.5 coding upstream 125887 30707282 ~ 30712588 (-)
XLOC_028859 si:dkey-11n14.1 coding upstream 302617 30884012 ~ 31064584 (-)
XLOC_028860 znf1099 coding upstream 344148 30925543 ~ 30931296 (-)
XLOC_028861 AL953856.3 coding upstream 373946 30955341 ~ 30955504 (-)
XLOC_028862 AL953856.9 coding upstream 393521 30974916 ~ 30975079 (-)
XLOC_028851 CR383668.2 non-coding downstream 212974 30363762 ~ 30364502 (-)
XLOC_028848 NA non-coding downstream 257965 30315803 ~ 30319511 (-)
XLOC_028844 NA non-coding downstream 436359 30104185 ~ 30141117 (-)
XLOC_028863 AL953856.10 non-coding upstream 403961 30985356 ~ 30985519 (-)
XLOC_028864 AL953856.7 non-coding upstream 410486 30991881 ~ 30992044 (-)
XLOC_028865 AL953856.8 non-coding upstream 411791 30993186 ~ 30993349 (-)

Expression


Co-expression Network