G993853


Basic Information

Item Value
gene id G993853
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 54406677 ~ 54406890 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1131103
GGTCAAGGCCAAGGCCCCTATCTTCGGCACACCTCTTCTATCATACCACATATGTGCTGATCTATTCCTGCCAAGAAATCGTTAACCGTCATTTCAAAACACAATGTCAAGCAGATGTCCTGAGTGTAATGACATGAAATGGGCTATATCATACTGTCTGGGGATTTATGTAATGCAAACTCAATGAACCACCCTTTATGAACAGGTCATAAAG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1131103 True 214 lncRNA 0.42 1 54406677 54406890

Neighbor

gene id symbol gene type direction distance location
LOC110535965 LOC106579898 coding upstream 57089 54328006 ~ 54349588 (+)
LOC110535063 LOC106579900 coding upstream 176233 54147143 ~ 54230444 (+)
LOC110535962 LOC106579901 coding upstream 259973 54113791 ~ 54146704 (+)
LOC110535959 LOC106579903 coding upstream 323589 54069351 ~ 54083088 (+)
LOC110535960 LOC106579905 coding upstream 337832 54067599 ~ 54068845 (+)
LOC118937454 NA coding downstream 132098 54538988 ~ 54549711 (+)
LOC110536632 NA coding downstream 222814 54629704 ~ 54631495 (+)
LOC110535974 vgll4 coding downstream 595505 55002395 ~ 55015938 (+)
slc20a1a s20aa coding downstream 629492 55036382 ~ 55043511 (+)
LOC110535976 LOC106579886 coding downstream 637633 55044523 ~ 55070046 (+)
G993840 NA non-coding upstream 18953 54384143 ~ 54387724 (+)
G993750 NA non-coding upstream 160560 54245897 ~ 54246117 (+)
G993743 NA non-coding upstream 169512 54236953 ~ 54237165 (+)
G993742 NA non-coding upstream 170244 54236212 ~ 54236433 (+)
G993741 NA non-coding upstream 170682 54235481 ~ 54235995 (+)
G993857 NA non-coding downstream 6562 54413452 ~ 54413655 (+)
G994344 NA non-coding downstream 199082 54605972 ~ 54606298 (+)
G994351 NA non-coding downstream 205052 54611942 ~ 54612149 (+)
G994356 NA non-coding downstream 207963 54614853 ~ 54615091 (+)
G994370 NA non-coding downstream 215898 54622788 ~ 54623058 (+)
G993738 NA other upstream 180214 54226131 ~ 54226463 (+)
G993612 NA other upstream 380623 54025768 ~ 54026054 (+)
G992601 fzd10 other upstream 957035 53446507 ~ 53449642 (+)
LOC110535061 rimbp2 other upstream 1024486 53281076 ~ 53398401 (+)
G991714 LOC106579928 other upstream 1862117 52542244 ~ 52544560 (+)
G995268 NA other downstream 948311 55355201 ~ 55357116 (+)
LOC110535064 cabin1 other downstream 1083207 55489662 ~ 55577699 (+)
G995364 NA other downstream 1111819 55518709 ~ 55519174 (+)
G995607 NA other downstream 1595964 56002854 ~ 56004867 (+)

Expression


Co-expression Network