XLOC_028858 (si:dkey-16p19.5)


Basic Information

Item Value
gene id XLOC_028858
gene name si:dkey-16p19.5
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007115.7
NCBI id CM002888.2
chromosome length 78093715
location 30707282 ~ 30712588 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00055882
ggtgtgtgacgtcataaggctgcgccgctcctACGCTGGAATTCAACTGGAGGAAGaataaagtgtccaaacacagagaaaaactcctgctgaagcgactgatctccacactgttataaagatggcgtttattaaagaggagagtgaagatgtgaagattaaagaaacattcacagtcaaacaggaagatctgcaggaacaaacagacctaattgaagagaatgaggagagtaaagaggaggaacatcatgtcaaaattgaggaaaaaaataatttacagactgatgatattttgaaaaggagagacaagaatcatttcacctgcactcagtgtggaaagagttttggaagaaaacacaatcttaagattcacatgaggatccacactggagagaaaccatacacatgcaatcagtgtgggaagagtttcaaccaatcatcaaacctttataatcacatgatgatccacactggagagaaaccattcaaatgcactcaatgtgggaaaagttttaaccgCTCATCAGACCTTCATCAacatatgaggattcacactggagagaaaccattcacatgccctcagtgtgggaagagtttttactgctcatcacaccttcatcaacacatgaggatccacactggagagaaaccattcacatgctctcagtgtgggaagagtttcaggcaatcatcaaactttaagcaacacatgaggatccacactgaagagaaaccattcacatgcactcagtgtggaaagagtttcaaccaataatcaaaccttaatcgac
>TCONS_00055883
atggcgtttattaaagaggagagtgaagatgtgaagattaaagaaacattcacagtcaaacaggaagatctgcaggaacaaacagacctaattgaagagaatgaggagagtaaagaggaggaacatcatgtcaaaattgaggaaaaaaataatttacagactgatgatattttgaaaaggagagacaagaatcatttcacctgcactcagtgtggaaagagttttggaagaaaacacaatcttaagattcacatgaggatccacactggagagaaaccatacacatgcaatcagtgtgggaagagtttcaaccaatcatcaaacctttataatcacatgatgatccacactggagagaaaccattcaaatgcactcaatgtgggaaaagttttaaccgCTCATCAGACCTTCATCAacatatgaggattcacactggagagaaaccattcacatgccctcagtgtgggaagagtttttactgctcatcacaccttcatcaacacatgaggatccacactggagagaaaccattcacatgctctcagtgtgggaagagtttcaggcaatcatcaaactttaagcaacacatgaggatccacactgaagagaaaccattcacatgcactcagtgtggaaagagtttcaaccaataa

Function

symbol description
si:dkey-16p19.5 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription, DNA-templated.

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDARG00000102559

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00055882 False 791 mRNA 0.41 3 30707282 30712588
TCONS_00055883 True 654 mRNA 0.40 2 30707298 30712160

Neighbor

gene id symbol gene type direction distance location
XLOC_028857 NA coding downstream 125887 30577476 ~ 30581395 (-)
XLOC_028856 NA coding downstream 160996 30540999 ~ 30546286 (-)
XLOC_028855 znf1052 coding downstream 179043 30521650 ~ 30528239 (-)
XLOC_028854 si:dkey-199m13.5 coding downstream 267166 30428468 ~ 30440116 (-)
XLOC_028853 znf1114 coding downstream 284957 30409750 ~ 30422325 (-)
XLOC_028859 si:dkey-11n14.1 coding upstream 171424 30884012 ~ 31064584 (-)
XLOC_028860 znf1099 coding upstream 212955 30925543 ~ 30931296 (-)
XLOC_028861 AL953856.3 coding upstream 242753 30955341 ~ 30955504 (-)
XLOC_028862 AL953856.9 coding upstream 262328 30974916 ~ 30975079 (-)
XLOC_028863 AL953856.10 coding upstream 272768 30985356 ~ 30985519 (-)
XLOC_028852 NA non-coding downstream 299455 30405854 ~ 30407827 (-)
XLOC_028851 CR383668.2 non-coding downstream 342780 30363762 ~ 30364502 (-)
XLOC_028848 NA non-coding downstream 387771 30315803 ~ 30319511 (-)
XLOC_028864 AL953856.7 non-coding upstream 279293 30991881 ~ 30992044 (-)
XLOC_028865 AL953856.8 non-coding upstream 280598 30993186 ~ 30993349 (-)

Expression


Co-expression Network