XLOC_002886 (il2rga)


Basic Information

Item Value
gene id XLOC_002886
gene name il2rga
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 33544329 ~ 33557299 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00005332
GCAGAAACAGAAACAACAAGAAGTGCGTTATGTGACCCTGTTCAAGATGAAATTACTGTTTCTCACTCTTTTCTTTGGGAACTTTTGCACATTTTCAGCATCATCTGATCCAAAAATAAACTGCCTCATCATAAATCTGGACTATGTGAACTGCACATGGAGCGAACATCAGTACAATTACAGTCTCAAGGGCGGGTTTTCATATTTTGACATCGAAGACTGTCCTGAATATGAGACAGCAAATGGTGTTAATGTGGCCTGCATGCTCCCCTACAAAGAAAGAACACAACGCTTTAATACATTGAAAACAAGCCTGTACCGTGACGATGGCAGTTTGGTGACGGAACAGGAACATATGCTGAAAGAATATGTGAAGCTTAACCCTCCGACCAACCTGTCTGTGGTGGAGAAAAAAGATGCTGAACTGTGGCTTTACTGGAATGTTACGAAGAACGACAATTGCATTGAGAGCGAAGTTCGTTACAGGACTGACCAGAACAATTGGAAGGACACCACTCCAGGCGTCAGGACCACATACAGTTTGCCCTTTCCTTCAAACAAACAGTACAAGTTTCAGGTCAGGGCTCGGATAACCTCATCCTGCGGCCAGTCCAAGTTCTGGAGCGAGTGGAGCGAGTCTGTGACATGGGGAACTGAGAAAGCCTTCAATGACACAGTTTTTTCTCCGGAGAGTTTGGGTTCCATGTCTGTGACGTCACTGGTCTTGTATGCTGTGGGAGCAACAATTCTACTCGTCATACTCTCCTGCCTGCTCGTCCACAGTGAAAGGTTAAGGATAATTTTAATACCAGTGGTACCAAATGCAGGACGGAATGTAAGCAATTATCTTGCGGCCCTTTTTGACAACTATGACGGCAATGTTGAAAAATGGCTGTCCATGCCTAAAGATCTGGAGAATGGTTTCAAACCCAATTTTACAGAGCGCGCCTGCCCTGTTCGTGAGTACAAGATCTTTTCCCAGTCCAGCAGTGATAGTGAGAGCATCCTCTCCAACCCAACAGACGTATCATCTGATTACCAAAGCATGCACAGATATTCATCAGCCTCAACAATACCCGGATCTGCTGAACCCCTGCAAACCCAAAATCCTTCTCAAGTAGACAATCCTGTCTAA

Function

symbol description
il2rga Predicted to enable cytokine binding activity and cytokine receptor activity. Acts upstream of or within lymphocyte differentiation. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be part of receptor complex. Predicted to be active in external side of plasma membrane. Is expressed in several structures, including eye; heart; liver; pleuroperitoneal region; and thymus. Human ortholog(s) of this gene implicated in X-linked severe combined immunodeficiency; combined T cell and B cell immunodeficiency; and severe combined immunodeficiency. Orthologous to human IL2RG (interleukin 2 receptor subunit gamma).

GO:

id name namespace
GO:0030098 lymphocyte differentiation biological_process
GO:0019221 cytokine-mediated signaling pathway biological_process
GO:0009897 external side of plasma membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0043235 receptor complex cellular_component
GO:0004896 cytokine receptor activity molecular_function
GO:0019955 cytokine binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-080402-1 Predicted to enable cytokine binding activity and cytokine receptor activity. Acts upstream of or within lymphocyte differentiation. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be part of receptor complex. Predicted to be active in external side of plasma membrane. Is expressed in several structures, including eye; heart; liver; pleuroperitoneal region; and thymus. Human ortholog(s) of this gene implicated in X-linked severe combined immunodeficiency; combined T cell and B cell immunodeficiency; and severe combined immunodeficiency. Orthologous to human IL2RG (interleukin 2 receptor subunit gamma).

Ensembl:

ensembl_id ENSDARG00000068858

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00005332 True 1135 mRNA 0.45 8 33544329 33557299

Neighbor

gene id symbol gene type direction distance location
XLOC_002882 ska2 coding downstream 164479 33367355 ~ 33379850 (-)
XLOC_002885 dre-mir-130a coding downstream 167115 33377130 ~ 33377214 (-)
XLOC_002884 dre-mir-301a coding downstream 167243 33377001 ~ 33377086 (-)
XLOC_002883 dre-mir-454a coding downstream 167388 33376818 ~ 33376941 (-)
XLOC_002881 c2cd2 coding downstream 201085 33305978 ~ 33343244 (-)
XLOC_002887 si:dkey-18a10.3 coding upstream 4268 33561567 ~ 33572441 (-)
XLOC_002888 eva1c coding upstream 22986 33580285 ~ 33588310 (-)
XLOC_002889 hunk coding upstream 57078 33614377 ~ 33621739 (-)
XLOC_002890 NA coding upstream 105866 33663165 ~ 33664789 (-)
XLOC_002891 BX569785.1 coding upstream 318832 33876131 ~ 33880364 (-)
XLOC_002877 NA non-coding downstream 379756 33158589 ~ 33164573 (-)
XLOC_002875 NA non-coding downstream 647385 32894997 ~ 32896944 (-)
XLOC_002900 NA non-coding upstream 639483 34196782 ~ 34198566 (-)
XLOC_002902 BX510654.1 non-coding upstream 769963 34327262 ~ 34327394 (-)
XLOC_002906 CT573139.2 non-coding upstream 1393761 34951060 ~ 34959178 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000304_16202982_16207060 NA coding CI01000304 null 16202820 ~ 16207117 (-)