G994808 (LOC106579883)


Basic Information

Item Value
gene id G994808
gene name LOC106579883
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 55091348 ~ 55091580 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1132108
CAATAATCCTTGCACCAGTAGTTCACTCTGGTTGGTCTTCACAGCACTGTTGAGAATGACCCATTGGCCTCTGCCCCTCCGAGCCTGGAGGACATACCCAGTAAGTAGTGTGGCCTGAGACTCAGGAGGATACCACTGCAGGACAATCCCCAGCACTGTCCGATTGGCTGACAGGAACAAGGGAGGGTTGAGAGTTGGTAGACTGGTCACCACTGTCGGTGGATATGTTGGTA

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1132108 True 233 lncRNA 0.53 1 55091348 55091580

Neighbor

gene id symbol gene type direction distance location
LOC110535979 LOC106579884 coding upstream 15542 55072874 ~ 55075806 (+)
LOC110535976 LOC106579886 coding upstream 21302 55044523 ~ 55070046 (+)
slc20a1a s20aa coding upstream 47837 55036382 ~ 55043511 (+)
LOC110535974 vgll4 coding upstream 75410 55002395 ~ 55015938 (+)
LOC110536632 NA coding upstream 459853 54629704 ~ 54631495 (+)
adra1a adra1a coding downstream 47413 55136414 ~ 55157272 (+)
ddx51 ddx51 coding downstream 286103 55377683 ~ 55382284 (+)
LOC110535988 LOC106579875 coding downstream 291846 55383426 ~ 55387596 (+)
LOC110535989 LOC106579874 coding downstream 320795 55412375 ~ 55422164 (+)
LOC118937389 NA coding downstream 389618 55481198 ~ 55488780 (+)
G994807 NA non-coding upstream 292 55090825 ~ 55091056 (+)
G994803 NA non-coding upstream 10617 55080280 ~ 55080731 (+)
G994741 NA non-coding upstream 19373 55067018 ~ 55071975 (+)
G994738 NA non-coding upstream 35977 55054445 ~ 55055371 (+)
G994782 NA non-coding upstream 85264 55000945 ~ 55006084 (+)
G994852 LOC106579880 non-coding downstream 79893 55171473 ~ 55175694 (+)
G994867 LOC106579879 non-coding downstream 105052 55196632 ~ 55199999 (+)
G994868 NA non-coding downstream 106410 55197990 ~ 55198738 (+)
G994908 NA non-coding downstream 164395 55255975 ~ 55256286 (+)
G993738 NA other upstream 864885 54226131 ~ 54226463 (+)
G993612 NA other upstream 1065294 54025768 ~ 54026054 (+)
G992601 fzd10 other upstream 1641706 53446507 ~ 53449642 (+)
LOC110535061 rimbp2 other upstream 1709157 53281076 ~ 53398401 (+)
G995268 NA other downstream 263621 55355201 ~ 55357116 (+)
LOC110535064 cabin1 other downstream 398517 55489662 ~ 55577699 (+)
G995364 NA other downstream 427129 55518709 ~ 55519174 (+)
G995607 NA other downstream 911274 56002854 ~ 56004867 (+)
LOC110536010 LOC106579856 other downstream 936591 56028141 ~ 56037300 (+)

Expression


Co-expression Network