G995268


Basic Information

Item Value
gene id G995268
gene name NA
gene type unknown
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 55355201 ~ 55357116 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1132602
TTGGAGTTATCAAAAAACTGCTTGGGACAGTTGATCGACATGGATTCAGAGCCTGGACGGACATCGAAGAACTTGCTCTTGGGAGAGTCGAGGAACTTCTTGGGAGAGTCGAGGAACTTCTTGGGAGAGTCGAGGAACTTCTTGGGAGAGTCGAGGAACTTCTTGGGAGAGTCGAGGAACCTCTTGGGAGAGTTGAGGAACTGCTCAGAATTCATGGGAAGGCGGTGTTTTGTAGGAGTACATGGAGACAGAGGCTTGTCTACTAcgtccctcttcttctccttcagttTAATTGCTCTAGCCTTCCACTTTGTGATCTCTCCTTGCTGAGTGGACACAAGGCTCTCCAATTCTGAAATTTTGCTCTGTAGCCTTTTCAGTTCCTCCTCAAGTTTGTTCTTTTCAAGGAGAATGTTGCTTTGGACCGTGCGTCCTCTGGCGGTTATCAGTCTGGCATGCAGATCCTGTCCCTCATTGAATGACTCTGCTTCCTCCTGTTGTGATCTTCTCAGAGTCTCCTTCAGCGTCCTCAGAGCGTCCTCCTTGTGGTTCAGGACCGTCGTCATCCTCAGTAACTCTTCTTGGTGTTTAGAGGACGATGCAGTCATCTCCAACTCCATTTTCAAAACTTTAGCTTTCAGCTCTTCATGCTGAAGAGCACTAGGTGATGCTCTTCTCTTAGCCAGAACTTCAGTCTCTCTGAGTTTCTCTTTTAGGACTTGAATGGAGCCCTCCCTGTCCTTGACTTGTGCACAAGCATCCTGAAGCTCAGTTTGTAGTAGCTGGGTGGCTTGTTTGTGGTTTGAGACACTATTAGCAGCTTTGATCTGGTCCTCTTCCAGCTGATCAACtctcatctgcatttcCTTGATTTCTCCATCCAACTGCTGACGTTTCAGGGTAAGTTGCTGGTTGTCCCTCAGCAGGTCAGCTTCAGTCTTGACGGAGGCACGCTCCAGTATctgcagtagagtagaggtctTACTCCTCTCTTCTTTCAGCTGACTGTCAGCCTGTGCTCGGACCACGCCTAGCTCTTTGAGCAAACCACAGCGCTCATCTCGCAATCCCTGGAGAGCCAGTGTGTTGGCCTGTGCCAAAGCAGAGCGCCGGGCCAGCTCTCGCTCCAGGAAATTCTCCACTGCTGCTGAGTCCGGTGAGTGGACCATGCATAGAGCATTCAGCTCCTCGTTGCTCCTCTCTCGCGCCCTCAGCTCCTCTGACACTGCTGCTGGGTGAGCGGCCAGGCTCTCCTCAAGCTTCTTCAAAACACTGTTCATTT
>TU1132603
TTGGAGTTATCAAAAAACTGCTTGGGACAGTTGATCGACATGGATTCAGAGCCTGGACGGACATCGAAGAACTTGCTCTTGGGAGAGTCGAGGAACTTCTTGGGAGAGTCGAGGAACTTCTTGGGAGAGTCGAGGAACTTCTTGGGAGAGTCGAGGAACTTCTTGGGAGAGTCGAGGAACCTCTTGGGAGAGTTGAGGAACTGCTCAGAATTCATGGGAAGGCGGTGTTTTGTAGGAGTACATGGAGACAGAGGCTTGTCTACTAcgtccctcttcttctccttcagttTAATTGCTCTAGCCTTCCACTTTGTGATCTCTCCTTGCTGAGTGGACACAAGGCTCTCCAATTCTGAAATTTTGCTCTGTAGCCTTTTCAGTTCCTCCTCAAGTTTGTTCTTTTCAAGGAGAATGTTGCTTTGGACCGTGCGTCCTCTGGCGGTTATCAGTCTGGCATGCAGATCCTGTCCCTCATTGAATGACTCTGCTTCCTCCTGTTGTGATCTTCTCAGAGTCTCCTTCAGCGTCCTCAGAGCGTCCTCCTTGTGGTTCAGGACCGTCGTCATCCTCAGTAACTCTTCTTGGTGTTTAGAGGACGATGCAGTCATCTCCAACTCCATTTTCAAAACTTTAGCTTTCAGCTCTTCATGCTGAAGAGCACTAGGTGATGCTCTTCTCTTAGCCAGAACTTCAGTCTCTCTGAGTTTCTCTTTTAGGACTTGAATGGAGCCCTCCCTGTCCTTGACTTGTGCACAAGCATCCTGAAGCTCAGTTTGTAGTAGCTGGGTGGCTTGTTTGTGGTTTGAGACACTATTAGCAGCTTTGATCTGGTCCTCTTCCAGCTGATCAACtctcatctgcatttcCTTGATTTCTCCATCCAACTGCTGACGTTTCAGGGTAAGTTGCTGGTTGTCCCTCAGCAGGTCAGCTTCAGTCTTGACGGAGGCACGCTCCAGTATctgcagtagagtagaggtctTACTCCTCTCTTCTTTCAGCTGACTGTCAGCCTGTGCTCGGACCACGCCTAGCTCTTTGAGCAAACCACAGCGCTCATCTCGCAATCCCTG

Function

NR:

description
unnamed protein product

GO: NA

KEGG:

id description

RNA

RNA id representative length rna type GC content exon number start site end site
TU1132602 False 1282 TUCP 0.50 7 55355201 55357116
TU1132603 True 1073 TUCP 0.49 6 55355201 55356796

Neighbor

gene id symbol gene type direction distance location
adra1a adra1a coding upstream 198652 55136414 ~ 55157272 (+)
LOC110535979 LOC106579884 coding upstream 279395 55072874 ~ 55075806 (+)
LOC110535976 LOC106579886 coding upstream 285155 55044523 ~ 55070046 (+)
slc20a1a s20aa coding upstream 311690 55036382 ~ 55043511 (+)
LOC110535974 vgll4 coding upstream 339263 55002395 ~ 55015938 (+)
ddx51 ddx51 coding downstream 20567 55377683 ~ 55382284 (+)
LOC110535988 LOC106579875 coding downstream 26310 55383426 ~ 55387596 (+)
LOC110535989 LOC106579874 coding downstream 55259 55412375 ~ 55422164 (+)
LOC118937389 NA coding downstream 124082 55481198 ~ 55488780 (+)
LOC110535064 cabin1 coding downstream 132546 55489662 ~ 55577699 (+)
G995264 NA non-coding upstream 5206 55349767 ~ 55349995 (+)
G995258 NA non-coding upstream 8336 55346476 ~ 55346865 (+)
G995198 NA non-coding upstream 52943 55302032 ~ 55302258 (+)
G995197 NA non-coding upstream 53668 55300349 ~ 55301533 (+)
G995196 NA non-coding upstream 55256 55299697 ~ 55299945 (+)
G995269 NA non-coding downstream 2737 55359853 ~ 55365400 (+)
G995273 NA non-coding downstream 7204 55364320 ~ 55366154 (+)
G995272 cenpe non-coding downstream 11211 55368327 ~ 55368787 (+)
G995289 NA non-coding downstream 31070 55388186 ~ 55388406 (+)
G995290 NA non-coding downstream 31777 55388893 ~ 55389308 (+)
G993738 NA other upstream 1128738 54226131 ~ 54226463 (+)
G993612 NA other upstream 1329147 54025768 ~ 54026054 (+)
G992601 fzd10 other upstream 1905559 53446507 ~ 53449642 (+)
LOC110535061 rimbp2 other upstream 1973010 53281076 ~ 53398401 (+)
G995364 NA other downstream 161593 55518709 ~ 55519174 (+)
G995607 NA other downstream 645738 56002854 ~ 56004867 (+)
LOC110536010 LOC106579856 other downstream 671055 56028141 ~ 56037300 (+)
LOC110536021 LOC106579845 other downstream 1029403 56386314 ~ 56434657 (+)

Expression


Co-expression Network