Fish Transcriptome and Expression Database

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model fish

XLOC_028866 (AL953856.6)

Basic Information

Item	Value
gene id	XLOC_028866
gene name	AL953856.6
gene type	non-coding
species	zebrafish (Danio rerio)
category of species	model fish

Chromosome Information

Item	Value
chromosome id	NC_007115.7
NCBI id	CM002888.2
chromosome length	78093715
location	30995796 ~ 30995959 (-)
genome version	GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00055893
atacttacctggcaggggagataccatgatcaagaaggtggttcacccagggcgaggcttggccattgcactccggccacgctggcccctgcgaattccccaaatgtgggaatctcgactgcataatttctggtagtgggggactgcgttcgcgctctcccctg

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id

ENSDARG00000110891

RNA

RNA id	representative	length	rna type	GC content	exon number	start site	end site
TCONS_00055893	True	164	snRNA	0.58	1	30995796	30995959

Notice the +/- strand.
Display format: symbol/gene id: RNA id. (Except when gene id is similar to RNA id.)
You can browse transcripts by dragging.
A more detailed transcript can be viewed by the zoom button in the upper right corner.

Neighbor

gene id	symbol	gene type	direction	distance	location
XLOC_028865	AL953856.8	coding	downstream	2447	30993186 ~ 30993349 (-)
XLOC_028864	AL953856.7	coding	downstream	3752	30991881 ~ 30992044 (-)
XLOC_028863	AL953856.10	coding	downstream	10277	30985356 ~ 30985519 (-)
XLOC_028862	AL953856.9	coding	downstream	20717	30974916 ~ 30975079 (-)
XLOC_028861	AL953856.3	coding	downstream	40292	30955341 ~ 30955504 (-)
XLOC_028867	AL953856.2	coding	upstream	2447	30998406 ~ 30998555 (-)
XLOC_028868	BX649620.1	coding	upstream	99870	31095829 ~ 31097622 (-)
XLOC_028869	BX571711.22	coding	upstream	152220	31148179 ~ 31149083 (-)
XLOC_028870	BX571711.9	coding	upstream	197933	31193892 ~ 31193998 (-)
XLOC_028871	BX571711.6	coding	upstream	198977	31194936 ~ 31195042 (-)

Expression

Co-expression Network