G995323


Basic Information

Item Value
gene id G995323
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 55428343 ~ 55430185 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1132666
CTATAAAGCTTTAAATCTCTTTACAAATATCTGTTCTGATCAATGTTAGAAAAACTCATTTAAAAAGGGTTAGATCCCTTCTAAAATATCTTTGATCCCTGGAAATAGTCTAAACTAAAATACTGACTCATTCTTGCACTACATACATGAAAAGGTCATTTCTGAAATTCTGAAAGATTACATGCATAGATGAGCAATTCAGAGGACAAAGAGAGCATTGCATTGTTTTGAAAATAACAACTATATGAAACCGAATAATAAAATACAATGTATACATTGATTTATAAATCAAGTTGAAATTTTCACTGTTGAAAGTAGACCGATGTAAATGACCATGTCTCTATCTGTCCAACTCAAGTTGCTTGATGAACGCATACCAATTAACTTGAAATCTTTAAAATAAGTTAAAGTAATACAACAATGAATCAATAAAAGCGTAATAAAATGAAACTATGAAATGCACCAGGActtgggagaaaaaaaatacCTGCCAACTTTAAAACAGATTATTGAGTTTGTGCCATACCGTGTTAAAATGACAACTTGCTAAATATGTCAAGCGAATTTGTATAGAAAGCATGAGTTCAAGACatacagtattttgttttttataaaaCGTCAaaaatatacaatttaaaaaaatctaatttacatTAATTCCTTCCAGTGCATGTCTCTAAAGATTCTGAAATCATTGAGGTACTATCTTAGTGTGCTTTCATCACACACATATGTAATGCATAGTTAATCAGTATTTATGAGTTAGCCAAGGTTATTCAATGTGACTATCGTCCACAAACGTATTTGGGGGAAAGTTCCATTTTGATGACAAATCTCAATTCCCCCCAAAAGGACTACTACGCATGTACAACCTATGATCTATGACTGGGTCGAGGGAACCAAAAAGTCATCCAGGGTCGCAACCATAGATTTAGACTATATAATCAACAACAATAGAATCAAAGTCTGTTGAAAATCAGTCACAGACCACAAATTCCCTGCTCTTGATCAGCAATAGTGATTCTAATATAAAAAGGTTTTCACCTAGCTATATCACATAATAAAACATGAAAATGCAGTCACCGCCTGTGCTTTTCTTGACGAATGCCCAAAACAGGCACTGGAAATTATGAATAGTCCAGTGTGATTCCAACACATAATGACAAAAGACAAAATTGAAGCTTTGGTCATTCCTTATCCTTGCAGTGATATTCCCAAAATATATACTACACTATATACAACATCATCTCAAAGACCCTTGGGAAATATGCTAAGGTCATTGTTATTATTGCTTTTTCAGAAATATATACACTTCCCAAATCATGAATTAAATCCACCTTCATCCAATTCCCCATTCCCAGGAAACTAGACTATAAATGGACTCTCCTCAAAATATGAAAAGGCGTGTGACCCAATGCACCACGGCTTACAAAGACATCTGTCACACTCCATTTTACAACATACCATTCAATTACTTTAGTATGGAAACAATTATGCTTCTGTTTCTTAAGAGATTCACAGGGCACACACAACACGTACCCAGCTTGTTGGAATAACTCGTAGTAAGTATCAGAAATATCCATTGTTGACATGTAATTCTGAAGTACATAACAGGTAAAAGTACTGGTCCTGAAATAGTACTGTAATAAAGTGCTACAGTACCACAAGGTGAACCAAACCCTTTTCCCAGGCAGCGGGTGGAGGATCCTCACTGAGGATTATTCTCGTAGGAGCCAGGGAACATAGACTTCCTGGTTttaggaggaggtggagggggcttGCTGTCAATTTTCTGAGGCAGAGGAGGGTGGA

Function

GO: NA

KEGG:

id description

RNA

RNA id representative length rna type GC content exon number start site end site
TU1132666 True 1812 lncRNA 0.35 2 55428343 55430185

Neighbor

gene id symbol gene type direction distance location
LOC110535989 LOC106579874 coding upstream 6179 55412375 ~ 55422164 (+)
LOC110535988 LOC106579875 coding upstream 40747 55383426 ~ 55387596 (+)
ddx51 ddx51 coding upstream 46059 55377683 ~ 55382284 (+)
adra1a adra1a coding upstream 271794 55136414 ~ 55157272 (+)
LOC110535979 LOC106579884 coding upstream 352537 55072874 ~ 55075806 (+)
LOC118937389 NA coding downstream 51013 55481198 ~ 55488780 (+)
LOC110535064 cabin1 coding downstream 59477 55489662 ~ 55577699 (+)
tbx16 LOC106579871 coding downstream 157179 55587364 ~ 55590671 (+)
LOC110535995 LOC106580250 coding downstream 200293 55630478 ~ 55650138 (+)
LOC110535996 LOC106585571 coding downstream 245951 55676136 ~ 55680687 (+)
G995322 NA non-coding upstream 2449 55425669 ~ 55425894 (+)
G995290 NA non-coding upstream 39035 55388893 ~ 55389308 (+)
G995289 NA non-coding upstream 39937 55388186 ~ 55388406 (+)
G995272 cenpe non-coding upstream 59556 55368327 ~ 55368787 (+)
G995273 NA non-coding upstream 62189 55364320 ~ 55366154 (+)
G995327 dock5 non-coding downstream 3808 55433993 ~ 55436200 (+)
G995314 nefl non-coding downstream 39800 55469985 ~ 55471095 (+)
G995368 NA non-coding downstream 65601 55495786 ~ 55498344 (+)
G995377 NA non-coding downstream 101315 55531500 ~ 55569256 (+)
G995268 NA other upstream 71227 55355201 ~ 55357116 (+)
slc20a1a s20aa other upstream 384934 55036382 ~ 55043511 (+)
G993738 NA other upstream 1201880 54226131 ~ 54226463 (+)
G993612 NA other upstream 1402289 54025768 ~ 54026054 (+)
G992601 fzd10 other upstream 1978701 53446507 ~ 53449642 (+)
G995364 NA other downstream 88524 55518709 ~ 55519174 (+)
G995607 NA other downstream 572669 56002854 ~ 56004867 (+)
LOC110536010 LOC106579856 other downstream 597986 56028141 ~ 56037300 (+)
LOC110536021 LOC106579845 other downstream 956334 56386314 ~ 56434657 (+)

Expression


Co-expression Network