G995314 (nefl)


Basic Information

Item Value
gene id G995314
gene name nefl
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 55469985 ~ 55471095 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1132656
TCATGTTTCATGTCTTTATTTGTGTTCAGTACTGTACATCATGGATCCCACAAAGAAGATTTGGTCTAAGGCATTTCAAATCAAGTATtgaacacaatggtgttctcaTAGGCATATTGTGGTGACAGAAAAGCACATAGGTTCTTCAAACAAATATTTCACAGgctaatacaatacagtatttgCGCACAAAACTCCACACATGCTCTCTCTTGTTTCTCGCACCCAATAATTAAGCAATCATATTgaatttattttgatgtatttcatATACAGGTATTTGCTTTTTATTGTTCTGAAGAGCACCTTGcaggcacacacatgcatacactctCATGCTCTGCTTCACTCAGTGTACAGCCATACTGTTTATTTGAACTCAAACATAAAGGCCTCTGCTGTATATACAGTGGTTTCCTGATTGATTGTACTGAACTGATCTATTTATAGAGCACCTCGATAGGGAACAATCAATGTGTCATTCATTCTTGATTTAAATATTTTGGTCTTTTGGCTTCTCTTTTTCTTCTGCCACTTCTACTTCCTGTTTGCTTTCTTCCTCATCATCCCCTTCTTCTGTTTCAGTGGCTCCATCCTCCACTCCATCTCCTCCTTCTTGGCTTTCATCTTCTCCATTTTCTTTAGGCTCCCCTGCTTCCTCTTTCTCCATATCTCCATTATCACCTGCTTTttgctcttcttcttcttcctctgcttcctcgactcccttctcctcttcttccccctcttcttcctgAGGACTTGACTCAGCAGGCTGTGCTTGACTGGCAGCTATAATCtcatctgcagaggagaatgatGAGCTGTACATGCGTAGGTAGGGGGCAGCAGAGCTCAGGCTGGACTGCATGAAGAACATGGGGCGGTTGTATGATGGGGCAACACTCAGGCTTTGGGAGTAGACACTGGACATTTCCCCTGGTCCTCCAGCACTGAAGCGATTCTCCTCCCCTTCAAGCAGCTTCCTGGAAACAG
>TU1132657
TCATGTTTCATGTCTTTATTTGTGTTCAGTACTGTACATCATGGATCCCACAAAGAAGATTTGGTCTAAGGCATTTCAAATCAAGTATtgaacacaatggtgttctcaTAGGCATATTGTGGTGACAGAAAAGCACATAGGTTCTTCAAACAAATATTTCACAGgctaatacaatacagtatttgCGCACAAAACTCCACACATGCTCTCTCTTGTTTCTCGCACCCAATAATTAAGCAATCATATTgaatttattttgatgtatttcatATACAGGTATTTGCTTTTTATTGTTCTGAAGAGCACCTTGcaggcacacacatgcatacactctCATGCTCTGCTTCACTCAGTGTACAGCCATACTGTTTATTTGAACTCAAACATAAAGGCCTCTGCTGTATATACAGTGGTTTCCTGATTGATTGTACTGAACTGATCTATTTATAGAGCACCTCGATAGGGAACAATCAATGTGTCATTCATTCTTGATTTAAATATTTTGGTCTTTTGGCTTCTCTTTTTCTTCTGCCACTTCTACTTCCTGTTTGCTTTCTTCCTCATCATCCCCTTCTTCTGTTTCAGTGGCTCCATCCTCCACTCCATCTCCTCCTTCTTGgctcttcttcttcttcctctgcttcctcgactcccttctcctcttcttccccctcttcttcctgAGGACTTGACTCAGCAGGCTGTGCTTGACTGGCAGCTATAATCtcatctgcagaggagaatgatGAGCTGTACATGCGTAGGTAGGGGGCAGCAGAGCTCAGGCTGGACTGCATGAAGAACATGGGGCGGTTGTATGATGGGGCAACACTCAGGCTTTGGGAGTAGACACTGGACATTTCCCCTGGTCCTCCAGCACTGAAGCGATTCTCCTCCCCTTCAAGCAGCTTCCTGGAAACAG

Function

symbol description
nefl Enables identical protein binding activity and protein C-terminus binding activity. A structural constituent of cytoskeleton. Involved in axonal transport and neurofilament bundle assembly. Located in axon and neurofilament. Implicated in Charcot-Marie-Tooth disease (multiple); amyotrophic lateral sclerosis; and invasive ductal carcinoma. Biomarker of several diseases, including COVID-19; Lewy body dementia; autoimmune disease (multiple); neurodegenerative disease (multiple); and prion disease (multiple).

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1132656 False 996 lncRNA 0.43 2 55469985 55471095
TU1132657 True 922 lncRNA 0.43 2 55469985 55471095

Neighbor

gene id symbol gene type direction distance location
LOC110535989 LOC106579874 coding upstream 47821 55412375 ~ 55422164 (+)
LOC110535988 LOC106579875 coding upstream 82389 55383426 ~ 55387596 (+)
ddx51 ddx51 coding upstream 87701 55377683 ~ 55382284 (+)
adra1a adra1a coding upstream 313436 55136414 ~ 55157272 (+)
LOC110535979 LOC106579884 coding upstream 394179 55072874 ~ 55075806 (+)
LOC118937389 NA coding downstream 10103 55481198 ~ 55488780 (+)
LOC110535064 cabin1 coding downstream 18567 55489662 ~ 55577699 (+)
tbx16 LOC106579871 coding downstream 116269 55587364 ~ 55590671 (+)
LOC110535995 LOC106580250 coding downstream 159383 55630478 ~ 55650138 (+)
LOC110535996 LOC106585571 coding downstream 205041 55676136 ~ 55680687 (+)
G995327 dock5 non-coding upstream 33785 55433993 ~ 55436200 (+)
G995323 NA non-coding upstream 39800 55428343 ~ 55430185 (+)
G995322 NA non-coding upstream 44091 55425669 ~ 55425894 (+)
G995290 NA non-coding upstream 80677 55388893 ~ 55389308 (+)
G995289 NA non-coding upstream 81579 55388186 ~ 55388406 (+)
G995368 NA non-coding downstream 24691 55495786 ~ 55498344 (+)
G995377 NA non-coding downstream 60405 55531500 ~ 55569256 (+)
G995402 NA non-coding downstream 126299 55597394 ~ 55599032 (+)
G995436 NA non-coding downstream 165080 55636175 ~ 55636374 (+)
G995268 NA other upstream 112869 55355201 ~ 55357116 (+)
slc20a1a s20aa other upstream 426576 55036382 ~ 55043511 (+)
G993738 NA other upstream 1243522 54226131 ~ 54226463 (+)
G993612 NA other upstream 1443931 54025768 ~ 54026054 (+)
G992601 fzd10 other upstream 2020343 53446507 ~ 53449642 (+)
G995364 NA other downstream 47614 55518709 ~ 55519174 (+)
G995607 NA other downstream 531759 56002854 ~ 56004867 (+)
LOC110536010 LOC106579856 other downstream 557076 56028141 ~ 56037300 (+)
LOC110536021 LOC106579845 other downstream 915424 56386314 ~ 56434657 (+)

Expression


Co-expression Network