G995368


Basic Information

Item Value
gene id G995368
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 55495786 ~ 55498344 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1132728
ggggtggagaaggggCTGCATTTAGAGTACACATTCATGTCCTGTTTTAAAATACTAGAGTGGGGTGAATCACTCACCTTGTAAAGAGTCATTTAAATTATTCTACTTTACTAGACCTATACTGTCCAGATATAGACGATATTGACAGACAATATAAGAGCAGGGTTAAAAATCCTTCACTATAAAAGAGGTAGCTTTTCAAAATGAATTACCAACACAATATATCAGTAAATGCACTGATGCAACTTTGCTCTACATTTTAACACTTAACATTGCATGACAGTAGTGTGATGAGGGACACGAGCAGTTTACTCTTAACTCCCAATTGTTGTTGGTGAGCTGATTGTCTCCTTCACCACAGTGTGTATTCTGCGTCTTTTAAAAATGTGCCACATCTGAGTGCACTAAACCTACGTTTAAATTTATGAACCATTTTTAAGAGCAAATTTTAGAGGGGAAGCAACAACACTGtacaaaaaaagtgtgtgtgtgtgtcagttcatACTTAGTAGGAAATGAGGCCAGATTTGCCTAATATATGTTCCTGAAAAAAGCTGAAATGCAATGTATGAAGCAGTATTCTTAGTAGCTTTTCCCTTATAGAAACTTAGGGCTACATACAGGAATGTACAATTGGCTCCGGTTACCTTTTCTCCAGCATGTCCCATAActgaaatgatattcacatcagcATTGTGTATTGTTTACAAAGACGTCAAGGGTAAACACAAATATTTGCCACAAGTGAAACGATGTCATTAAATAAATGCTGTTGGTTGTGTATATTGAATGGAAACTGACCATTCATTACAAATGGCTTTGCAAAATATCTTTGCATTATACTGTAAAAACAGCCTTTAGCATGTTGTTTTCCCCTATGCCCTGTCTAGCTTGAATGTCTGAATACTGCAGCCTTTAGCATGTTGTTTTCCCCTATGCCCTGTCTAGCTTGAATGTCTGAATACTGCAGCCTTTAGCATGTTGTTTCCCCCTATGCCCTGTCTAGCTTGAATGTCTGAATACTGCAGCCTTTAGCATGTTGTTTTCCCCCTATGCCCTGTCTAGCTTGAATGTCTGAATACTGCAGCCATATAGCCCATGTTGCCAGTTTCTGTCATTCTTTCCTGCCTGCTTGTTTCTGCCACCTGCTTTGTCGTTTATATGCATGTAGATCCCAAGGAATAATGCTGTCACTGGACAAATTCAGTCCTCTCTCAAACAATCCACTGAATGGTGTGACTTGGACCGTGGGCTACTATTGTGTTTTGGTGTTGGCTAACGTTTGCAACAAAGATCTTAAagcaaagtatgtaatagtcataagcaaattttctctgtcaggatcaagaacaaagtcctgctgggcataaagaagatagatacacggggtcatatcaaactgtacctctagtattttctgtgcagcagtaagtatagattgccagaatctggcaatctctacagctccaaaatacatgcatataggttccactttcagaggtacatcttttacagttaggagacatatctgttttcattctatggagtctcaaaggagtataataaaaatgtgtacaaacatttgtaattagattctttcatttttacattggtagaggagcagtataccctgtcgcaaacctc
>TU1132729
ggggtggagaaggggCTGCATTTAGAGTACACATTCATGTCCTGTTTTAAAATACTAGAGTGGGGTGAATCACTCACCTTGTAAAGAGTCATTTAAATTATTCTACTTTACTAGACCTATACTGTCCAGATATAGACGATATTGACAGACAATATAAGAGCAGGGTTAAAAATCCTTCACTATAAAAGAGGTAGCTTTTCAAAATGAATTACCAACACAATATATCAGTAAATGCACTGATGCAACTTTGCTCTACATTTTAACACTTAACATTGCATGACAGTAGTGTGATGAGGGACACGAGCAGTTTACTCTTAACTCCCAATTGTTGTTGGTGAGCTGATTGTCTCCTTCACCACAGTGTGTATTCTGCGTCTTTTAAAAATGTGCCACATCTGAGTGCACTAAACCTACGTTTAAATTTATGAACCATTTTTAAGAGCAAATTTTAGAGGGGAAGCAACAACACTGtacaaaaaaagtgtgtgtgtgtgtcagttcatACTTAGTAGGAAATGAGGCCAGATTTGCCTAATATATGTTCCTGAAAAAAGCTGAAATGCAATGTATGAAGCAGTATTCTTAGTAGCTTTTCCCTTATAGAAACTTAGGGCTACATACAGGAATGTACAATTGGCTCCGGTTACCTTTTCTCCAGCATGTCCCATAActgaaatgatattcacatcagcATTGTGTATTGTTTACAAAGACGTCAAGGGTAAACACAAATATTTGCCACAAGTGAAACGATGTCATTAAATAAATGCTGTTGGTTGTGTATATTGAATGGAAACTGACCATTCATTACAAATGGCTTTGCAAAATATCTTTGCATTATACTGTAAAAACAGCCTTTAGCATGTTGTTTTCCCCTATGCCCTGTCTAGCTTGAATGTCTGAATACTGCAGCCTTTAGCATGTTGTTTTCCCCTATGCCCTGTCTAGCTTGAATGTCTGAATACTGCAGCCTTTAGCATGTTGTTTTCCCCCTATGCCCTGTCTAGCTTGAATGTCTGAATACTGCAGCCTTTAGCATGTTGTTTTCCCCCTATGCCCTGTCTAGCTTGAATGTCTGAATACTGCAGCCATATAGCCCATGTTGCCAGTTTCTGTCATTCTTTCCTGCCTGCTTGTTTCTGCCACCTGCTTTGTCGTTTATATGCATGTAGATCCCAAGGAATAATGCTGTCACTGGACAAATTCAGTCCTCTCTCAAACAATCCACTGAATGGTGTGACTTGGACCGTGGGCTACTATTGTGTTTTGGTGTTGGCTAACGTTTGCAACAAAGATCTTAAagcaaagtatgtaatagtcataagcaaattttctctgtcaggatcaagaacaaagtcctgctgggcataaagaagatagatacacggggtcatatcaaactgtacctctagtattttctgtgcagcagtaagtatagattgccagaatctggcaatctctacagctccaaaatacatgcatataggttccactttcagaggtacatcttttacagttaggagacatatctgttttcattctatggagtctcaaaggagtataataaaaatgtgtacaaacatttgtaattagattctttcatttttacattggtagaggagcagtataccctgtcgcaaacctc

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1132728 False 1644 lncRNA 0.39 3 55495786 55498344
TU1132729 True 1645 lncRNA 0.39 3 55495786 55498344

Neighbor

gene id symbol gene type direction distance location
LOC118937389 NA coding upstream 7006 55481198 ~ 55488780 (+)
LOC110535989 LOC106579874 coding upstream 73622 55412375 ~ 55422164 (+)
LOC110535988 LOC106579875 coding upstream 108190 55383426 ~ 55387596 (+)
ddx51 ddx51 coding upstream 113502 55377683 ~ 55382284 (+)
adra1a adra1a coding upstream 339237 55136414 ~ 55157272 (+)
tbx16 LOC106579871 coding downstream 89020 55587364 ~ 55590671 (+)
LOC110535995 LOC106580250 coding downstream 132134 55630478 ~ 55650138 (+)
LOC110535996 LOC106585571 coding downstream 177792 55676136 ~ 55680687 (+)
LOC110535997 LOC106579866 coding downstream 185499 55683843 ~ 55690131 (+)
LOC110535066 gnrh1 coding downstream 192408 55690752 ~ 55691740 (+)
G995314 nefl non-coding upstream 24691 55469985 ~ 55471095 (+)
G995327 dock5 non-coding upstream 59586 55433993 ~ 55436200 (+)
G995323 NA non-coding upstream 65601 55428343 ~ 55430185 (+)
G995322 NA non-coding upstream 69892 55425669 ~ 55425894 (+)
G995290 NA non-coding upstream 106478 55388893 ~ 55389308 (+)
G995377 NA non-coding downstream 33156 55531500 ~ 55569256 (+)
G995402 NA non-coding downstream 99050 55597394 ~ 55599032 (+)
G995436 NA non-coding downstream 137831 55636175 ~ 55636374 (+)
G995430 NA non-coding downstream 153616 55651960 ~ 55652972 (+)
G995268 NA other upstream 138670 55355201 ~ 55357116 (+)
slc20a1a s20aa other upstream 452377 55036382 ~ 55043511 (+)
G993738 NA other upstream 1269323 54226131 ~ 54226463 (+)
G993612 NA other upstream 1469732 54025768 ~ 54026054 (+)
G992601 fzd10 other upstream 2046144 53446507 ~ 53449642 (+)
G995364 NA other downstream 20365 55518709 ~ 55519174 (+)
G995607 NA other downstream 504510 56002854 ~ 56004867 (+)
LOC110536010 LOC106579856 other downstream 529827 56028141 ~ 56037300 (+)
LOC110536021 LOC106579845 other downstream 888175 56386314 ~ 56434657 (+)
LOC110536038 LOC106579834 other downstream 1553765 57044708 ~ 57072429 (+)

Expression


Co-expression Network