Fish Transcriptome and Expression Database

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model fish

XLOC_028867 (AL953856.2)

Basic Information

Item	Value
gene id	XLOC_028867
gene name	AL953856.2
gene type	non-coding
species	zebrafish (Danio rerio)
category of species	model fish

Chromosome Information

Item	Value
chromosome id	NC_007115.7
NCBI id	CM002888.2
chromosome length	78093715
location	30998406 ~ 30998555 (-)
genome version	GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00055894
atattTACCTgacaggggagataccatgatcaagaaagtggttcacccagggcaaggcttggccattgcactccggccaaaAGACCCCTGCGAATTCCTCAAATGTGGTAATCttgactgcataatttctggtagtggggctctcccctg

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id

ENSDARG00000098340

RNA

RNA id	representative	length	rna type	GC content	exon number	start site	end site
TCONS_00055894	True	150	snRNA	0.50	1	30998406	30998555

Notice the +/- strand.
Display format: symbol/gene id: RNA id. (Except when gene id is similar to RNA id.)
You can browse transcripts by dragging.
A more detailed transcript can be viewed by the zoom button in the upper right corner.

Neighbor

gene id	symbol	gene type	direction	distance	location
XLOC_028866	AL953856.6	coding	downstream	2447	30995796 ~ 30995959 (-)
XLOC_028865	AL953856.8	coding	downstream	5057	30993186 ~ 30993349 (-)
XLOC_028864	AL953856.7	coding	downstream	6362	30991881 ~ 30992044 (-)
XLOC_028863	AL953856.10	coding	downstream	12887	30985356 ~ 30985519 (-)
XLOC_028862	AL953856.9	coding	downstream	23327	30974916 ~ 30975079 (-)
XLOC_028868	BX649620.1	coding	upstream	97274	31095829 ~ 31097622 (-)
XLOC_028869	BX571711.22	coding	upstream	149624	31148179 ~ 31149083 (-)
XLOC_028870	BX571711.9	coding	upstream	195337	31193892 ~ 31193998 (-)
XLOC_028871	BX571711.6	coding	upstream	196381	31194936 ~ 31195042 (-)
XLOC_028872	BX571711.21	coding	upstream	197438	31195993 ~ 31196099 (-)

Expression

Co-expression Network