G995462


Basic Information

Item Value
gene id G995462
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 55708382 ~ 55709298 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1132856
tccagaatggtcctgtatttggctccatccatcttcccatcaattttaaccatcttccctgtccctgctgaagaaaagcaggcccaaaccatgatgctgccaccaccatgtttgacagtggggatggtgtgttcagggtgatgagctgtgttgcttttacgccaaacataacgttttgcattgttgccaagaagttcaattttggtttcatctgaccagagcaccttcttccacatgtttggtgtgtctcccaggtggcttgtggcaaactttaaactacactttttatggatatctttaagaaatggctttcttcttgccactcttccataaaggtcagatttgtgcaatatacgactgattgttgtcctatggacagagtctcccacctcagctgtagatctctgcagttcatccagagtgatcatgggcctcttggctgcatctctgatcagtcttctccttgtatgagctgaaagtttagagggacggccaggtcttggtagatttgcagtggatcattcagagatcctcactgaacttctggagagagtttgctgcactgaaagtaaaggggctgaataattttgcacgcccaatttttcagtttttgatttgttaaaaaagtttgaaatatccaataaatg

Function

NR:

description
Tc1-like transporase

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1132856 True 647 lncRNA 0.43 2 55708382 55709298

Neighbor

gene id symbol gene type direction distance location
ankrd39 ankrd39 coding upstream 1624 55691790 ~ 55706758 (+)
LOC110535066 gnrh1 coding upstream 16642 55690752 ~ 55691740 (+)
LOC110535997 LOC106579866 coding upstream 18251 55683843 ~ 55690131 (+)
LOC110535996 LOC106585571 coding upstream 27695 55676136 ~ 55680687 (+)
LOC110535995 LOC106580250 coding upstream 58244 55630478 ~ 55650138 (+)
fgfr1a LOC106579865 coding downstream 13454 55722752 ~ 55763695 (+)
lgi3 LOC106579864 coding downstream 72043 55781341 ~ 55796866 (+)
chmp7 chmp7 coding downstream 90968 55800266 ~ 55803159 (+)
entpd4 LOC106579862 coding downstream 99882 55809180 ~ 55817839 (+)
slc25a37 slc25a37 coding downstream 132735 55842033 ~ 55852793 (+)
G995430 NA non-coding upstream 55410 55651960 ~ 55652972 (+)
G995436 NA non-coding upstream 72008 55636175 ~ 55636374 (+)
G995402 NA non-coding upstream 109350 55597394 ~ 55599032 (+)
tbx16 LOC106579871 non-coding upstream 118090 55587364 ~ 55590671 (+)
G995377 NA non-coding upstream 139126 55531500 ~ 55569256 (+)
G995500 NA non-coding downstream 68241 55777539 ~ 55844504 (+)
G995466 NA non-coding downstream 95990 55805288 ~ 55806077 (+)
G995531 NA non-coding downstream 148473 55857771 ~ 55858007 (+)
G995540 NA non-coding downstream 160810 55870108 ~ 55870444 (+)
G995541 NA non-coding downstream 161509 55870807 ~ 55968382 (+)
G995364 NA other upstream 189208 55518709 ~ 55519174 (+)
LOC110535064 cabin1 other upstream 196172 55489662 ~ 55577699 (+)
G995268 NA other upstream 351266 55355201 ~ 55357116 (+)
slc20a1a s20aa other upstream 664973 55036382 ~ 55043511 (+)
G993738 NA other upstream 1481919 54226131 ~ 54226463 (+)
G995607 NA other downstream 293556 56002854 ~ 56004867 (+)
LOC110536010 LOC106579856 other downstream 318873 56028141 ~ 56037300 (+)
LOC110536021 LOC106579845 other downstream 677221 56386314 ~ 56434657 (+)
LOC110536038 LOC106579834 other downstream 1342811 57044708 ~ 57072429 (+)
G997824 NA other downstream 2078170 57787468 ~ 57789171 (+)

Expression


Co-expression Network