XLOC_028868 (BX649620.1)


Basic Information

Item Value
gene id XLOC_028868
gene name BX649620.1
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007115.7
NCBI id CM002888.2
chromosome length 78093715
location 31095829 ~ 31097622 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00055896
TCAAGATTGGCAAATTTGCATCAACATCACCAAGACTGCTTTAACCGCTTTAACGAAGCAGAAAGTGAATTAAGACAAAAGACTTGCCCACAAAAATCAAAGCATTCGTTCATCACCTGCAACAGCAACACTCACATCATCTCCATCCTGTCCTGAGCAACCTACATCATGTGCAACTGCAACACTCATGACATCTTCATACTCTCCTGAGCAGCGTTTATCACCTGCAACAGCAACACTCAAAACATTCTGTTCAGCAAAGAGTCTATAATGAATTCTGTTTTGATTCTCCTTTTACTCTTACttcataaaaacattttactacatgaaaaaaaaaaaaaaagttaacggTACAATATTtccattgtgttttatttgttctgGTCAGTGTATACATAATGCAACTTTGAAAATAGGTAATTACTGATTTATATTTAACccatttaattaactttttatagtttttttgtgaTTGGCTAAAACATTCATTTAGATTTGGAAGTTTTGAGTGATTAAGGCAGACATTTTAAATATGCAAGCTTTTATTGAGCAATGTTGTTCTatagattttagatatttctttagGTAGTTTTGCCCAGATTAGTTTTGAATTAGGAAACTCaaggtatcagcaccaaattatCTACTAATGAACGGGTCTGGATTGGATCCGGATAAGCTACTTCATCAATGGGTTCGGGTCTAGATTGGATCCGGGCCGGATGAGCTAGTCTATCAGCGGGTCTGGATCGGATCTGCGCCGGATGAGCTACTCTATCAGCGGGTCTGGATTGGATCCGAGCTGGATGAGCTACTCTATTAATGGGTCCGGATCGGTTCCggatgaagagctttattagcgGATACGGGTAACGTCTGAAATGGGTCCGGAACGGATACAGAATTCTTATCCGTTCCGGATCCGTTGCGCTGTGCAAGTAGACTCCAGTACAGACCCATTTGCGGACCCGTTTCTGTTGCGGATCATGTAATACCTCCGGCGCGGATCTGTTCCGGAGTCATTTTGATATCTGGAAAACCTTTAGGCAGCAGTAAGCCTCACAAATACTTAAAATTGATTGACTTAAACTGCTTGaactttattaaaactgttagcactaatatattgtgttaactacactttgttcattttgtgcttttgttcctttgtttattGGTCTTAAAGATAAGCCTGCTGTGAAAAAATAGTTTCTCTGAGATTATGTGTTATGTAATCTTGTTaaaatttatttcttaaaataaaagtatagaaAAAAGTATCGTTCGAAACCGGTATCGAATTCAGGGTATCGGTATCGAACACTTTAGAACAATACACAGCCctagtcaagtgatgtgattttgcaggtcagagttcaccaagcttgaactttgcaacgcagtgaactgcgaaacttgatgcacaaacttggtttccggtctgacgcattcacgtgcgtatgaatggaagtctatggggggaaaagtccagtgtgaccgcagcttaagtgcaagtgaatagtttctctccagtgtggctcaccATGTGTAAATTAAAGGAcgatgatcggctgaaactcttcccacactgagggcatgtgaatggtttctctccagtgtggatactCATGTGTctattaaagtttgatgattggctgaaactcttcc

Function

GO:

id name namespace
GO:0022613 ribonucleoprotein complex biogenesis biological_process
GO:0043603 cellular amide metabolic process biological_process
GO:0043604 amide biosynthetic process biological_process
GO:1901566 organonitrogen compound biosynthetic process biological_process
GO:0043043 peptide biosynthetic process biological_process
GO:0006412 translation biological_process
GO:0048856 anatomical structure development biological_process
GO:0042254 ribosome biogenesis biological_process
GO:0042255 ribosome assembly biological_process
GO:0042273 ribosomal large subunit biogenesis biological_process
GO:0042274 ribosomal small subunit biogenesis biological_process
GO:0061028 establishment of endothelial barrier biological_process
GO:0006518 peptide metabolic process biological_process
GO:0032501 multicellular organismal process biological_process
GO:0032502 developmental process biological_process
GO:0044391 ribosomal subunit cellular_component
GO:1990904 ribonucleoprotein complex cellular_component
GO:0022625 cytosolic large ribosomal subunit cellular_component
GO:0022626 cytosolic ribosome cellular_component
GO:0022627 cytosolic small ribosomal subunit cellular_component
GO:0044445 obsolete cytosolic part cellular_component
GO:0005829 cytosol cellular_component
GO:0005840 ribosome cellular_component
GO:0032991 protein-containing complex cellular_component
GO:0015934 large ribosomal subunit cellular_component
GO:0015935 small ribosomal subunit cellular_component
GO:0043228 non-membrane-bounded organelle cellular_component
GO:0043232 intracellular non-membrane-bounded organelle cellular_component
GO:0005198 structural molecule activity molecular_function
GO:0003723 RNA binding molecular_function
GO:0003735 structural constituent of ribosome molecular_function

KEGG: NA

Ensembl:

ensembl_id ENSDARG00000099699

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00055896 True 1668 lncRNA 0.39 2 31095829 31097622

Neighbor

gene id symbol gene type direction distance location
XLOC_028859 si:dkey-11n14.1 coding downstream 31245 30884012 ~ 31064584 (-)
XLOC_028867 AL953856.2 coding downstream 97274 30998406 ~ 30998555 (-)
XLOC_028866 AL953856.6 coding downstream 99870 30995796 ~ 30995959 (-)
XLOC_028865 AL953856.8 coding downstream 102480 30993186 ~ 30993349 (-)
XLOC_028864 AL953856.7 coding downstream 103785 30991881 ~ 30992044 (-)
XLOC_028869 BX571711.22 coding upstream 50557 31148179 ~ 31149083 (-)
XLOC_028870 BX571711.9 coding upstream 96270 31193892 ~ 31193998 (-)
XLOC_028871 BX571711.6 coding upstream 97314 31194936 ~ 31195042 (-)
XLOC_028872 BX571711.21 coding upstream 98371 31195993 ~ 31196099 (-)
XLOC_028873 BX571711.12 coding upstream 100478 31198100 ~ 31198206 (-)
XLOC_028863 AL953856.10 non-coding downstream 110310 30985356 ~ 30985519 (-)

Expression


Co-expression Network