Fish Transcriptome and Expression Database

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model fish

XLOC_028873 (BX571711.12)

Basic Information

Item	Value
gene id	XLOC_028873
gene name	BX571711.12
gene type	non-coding
species	zebrafish (Danio rerio)
category of species	model fish

Chromosome Information

Item	Value
chromosome id	NC_007115.7
NCBI id	CM002888.2
chromosome length	78093715
location	31198100 ~ 31198206 (-)
genome version	GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00055901
gtgctcgctacggtggcacatatactaaaattggatcgatacagagaagattagcatggcccctgcgaaaggatgacacgcaaatccgtgaagcgatccatattgct

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id

ENSDARG00000114548

RNA

RNA id	representative	length	rna type	GC content	exon number	start site	end site
TCONS_00055901	True	107	snRNA	0.48	1	31198100	31198206

Notice the +/- strand.
Display format: symbol/gene id: RNA id. (Except when gene id is similar to RNA id.)
You can browse transcripts by dragging.
A more detailed transcript can be viewed by the zoom button in the upper right corner.

Neighbor

gene id	symbol	gene type	direction	distance	location
XLOC_028872	BX571711.21	coding	downstream	2001	31195993 ~ 31196099 (-)
XLOC_028871	BX571711.6	coding	downstream	3058	31194936 ~ 31195042 (-)
XLOC_028870	BX571711.9	coding	downstream	4102	31193892 ~ 31193998 (-)
XLOC_028869	BX571711.22	coding	downstream	49017	31148179 ~ 31149083 (-)
XLOC_028868	BX649620.1	coding	downstream	100478	31095829 ~ 31097622 (-)
XLOC_028874	BX571711.16	coding	upstream	954	31199160 ~ 31199266 (-)
XLOC_028875	BX571711.15	coding	upstream	2011	31200217 ~ 31200323 (-)
XLOC_028876	BX571711.14	coding	upstream	14179	31212385 ~ 31212491 (-)
XLOC_028877	BX571711.2	coding	upstream	15765	31213971 ~ 31214077 (-)
XLOC_028878	BX571711.11	coding	upstream	18406	31216612 ~ 31216718 (-)

Expression

Co-expression Network