Fish Transcriptome and Expression Database

Home /
Search /
- Gene
- RNA
- Bioproject
Expression /
Analysis /
- Coding ability prediction
- Expression count
- Visual Omics
Tools /
- Neighbor
- BLAST
Statistics /
Download /
Help

model fish

XLOC_028874 (BX571711.16)

Basic Information

Item	Value
gene id	XLOC_028874
gene name	BX571711.16
gene type	non-coding
species	zebrafish (Danio rerio)
category of species	model fish

Chromosome Information

Item	Value
chromosome id	NC_007115.7
NCBI id	CM002888.2
chromosome length	78093715
location	31199160 ~ 31199266 (-)
genome version	GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00055902
gtgcttgctacggtggcacatatactaaaattggatcgatacagagaagattagcatggcccctgcgaaaggatgacacgcaaatccgtgaagcgctccataatgct

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id

ENSDARG00000116138

RNA

RNA id	representative	length	rna type	GC content	exon number	start site	end site
TCONS_00055902	True	107	snRNA	0.48	1	31199160	31199266

Notice the +/- strand.
Display format: symbol/gene id: RNA id. (Except when gene id is similar to RNA id.)
You can browse transcripts by dragging.
A more detailed transcript can be viewed by the zoom button in the upper right corner.

Neighbor

gene id	symbol	gene type	direction	distance	location
XLOC_028873	BX571711.12	coding	downstream	954	31198100 ~ 31198206 (-)
XLOC_028872	BX571711.21	coding	downstream	3061	31195993 ~ 31196099 (-)
XLOC_028871	BX571711.6	coding	downstream	4118	31194936 ~ 31195042 (-)
XLOC_028870	BX571711.9	coding	downstream	5162	31193892 ~ 31193998 (-)
XLOC_028869	BX571711.22	coding	downstream	50077	31148179 ~ 31149083 (-)
XLOC_028875	BX571711.15	coding	upstream	951	31200217 ~ 31200323 (-)
XLOC_028876	BX571711.14	coding	upstream	13119	31212385 ~ 31212491 (-)
XLOC_028877	BX571711.2	coding	upstream	14705	31213971 ~ 31214077 (-)
XLOC_028878	BX571711.11	coding	upstream	17346	31216612 ~ 31216718 (-)
XLOC_028879	BX571711.18	coding	upstream	19463	31218729 ~ 31218835 (-)

Expression

Co-expression Network