G997824


Basic Information

Item Value
gene id G997824
gene name NA
gene type unknown
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 57787468 ~ 57789171 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1135543
TTCACCATTAACGTCATATTTATTGTTATTTAGTTACTCAATAAAACATATACAGATATATACAATATGCAGGAAAACAGACGACTGCACTTTACATAttattaaaaaaagaaaacaaaaaagaaacAGTTCGCACGTTGCCGTCACAGGCCTCCATCTATTGTTTCAGAAATTCAAATTCAACAGAAGCTTTATTTAAAGGTTACAAGATTGCCTAACACACAGCAAATGTTCTCTTATTTTACATGTGCAATACCAATATTCCTTTTTTCAAATCCCTTATTAAATGGTTCCTTGACCTCCCCTACAGTTTACATTGGCTGTATTGTATAACTGTGTTGGAGCCCAAGCTAAATAGAAGAGGAAATGAGTGAAAGAGAGGAATTTGTATTCAGGAATCCCTTTTTGCAGATGCCCACACCAAAAATAaactatttctctctccatctccctcccactCTTCCTCCCCCTGTTTCAGGGTCCAGGCCAGTTCTATTGGACCAGGAGGATGGCCTGGTGAGGTTGTGAGGTACAGTGTCTCAAAAGGTCCAGATCTCATCAGGTTCCTGTGTCTCTGGGTAACAATGGGGTTCCAGGCCTGAGGGAGAGGTCCTGGTGAGAGGgctgctctcctctccctgtacCCCTGAGAGccatgggagggaggaagggctggTTCACACACATATCCTCCAAACTCTGGCTGACAAAGATGACCAGAGTCCCTCAACGGGTGAATATGGGTCAGGGTGGTTCTGCTTGAGGCCATACCCAAGCCCAGTCCCAGTGATCTATACACTAGGCTGGGGGCAGGCATGGTGGGTGGTACCACCTCCAACCCACAGAGAGAACCACGGCTAGGAGGTCACTGAGTACAGGTACAGGGTACAGCTGGTGAGGATGGGGTATTAATCACAGAGCTCCCAAATACTAAGAGACAACTTTCATGTCTAAAGAATGTAACAGAACAGAGACTCAACACTGTTATCCCAATACAGCCAAGGACATTTTGTCTTTCTGTTTTCTCAGTTTTAGTTTGTTCCTTTCCTCCATTGACATTTCTCCTGTTTTcttcaaaaaacaacaaaaaactaaaAGGGTGATTTGAGGTTTCCCAGATGTGGGCACCACTGAATAGAGCCCAAGCTGTATAGTCCAGCGATGcatgagtgagtgtgtatgtatttgtgcccaatagtgtgtgtgagtgtgtgtgagcatgagtgtgtatgtgttgatgtgtgtgtatgagtgtgtatatGTCCTTCTCTCCCTGAACAGGCGAGAGCCAATGCAGACGCCTCATCATCAATACCTttacatcatcctcatcatcaatACCTTTATGTCATCATCAATACCTTTATGTCATCCTCATCATCAATACCTGTATGTCATCCTCATCATCAATACCTTTATATCATCCTCATCATTGCTGTCGTCTTCATTATCATCTGCCTCTgactctctccaccccccccccccctctctctttcttttgatcttccctccatctcctggGCTGCCCTGGTTGTGTTCAGGTCAGGGCAGCCACGAAGGTCCCAAAGCGGTTGGAGATGTCGGAGTGCAGGGAGCGCCAAGAGGAGACGGGCCCCCCTCGGCCCTTACTGTCCCCCAGCTCATCTGTGCAGTGGA
>TU1135544
TTCACCATTAACGTCATATTTATTGTTATTTAGTTACTCAATAAAACATATACAGATATATACAATATGCAGGAAAACAGACGACTGCACTTTACATAttattaaaaaaagaaaacaaaaaagaaacAGTTCGCACGTTGCCGTCACAGGCCTCCATCTATTGTTTCAGAAATTCAAATTCAACAGAAGCTTTATTTAAAGGTTACAAGATTGCCTAACACACAGCAAATGTTCTCTTATTTTACATGTGCAATACCAATATTCCTTTTTTCAAATCCCTTATTAAATGGTTCCTTGACCTCCCCTACAGTTTACATTGGCTGTATTGTATAACTGTGTTGGAGCCCAAGCTAAATAGAAGAGGAAATGAGTGAAAGAGAGGAATTTGTATTCAGGAATCCCTTTTTGCAGATGCCCACACCAAAAATAaactatttctctctccatctccctcccactCTTCCTCCCCCTGTTTCAGGGTCCAGGCCAGTTCTATTGGACCAGGAGGATGGCCTGGTGAGGTTGTGAGGTACAGTGTCTCAAAAGGTCCAGATCTCATCAGGTTCCTGTGTCTCTGGGTAACAATGGGGTTCCAGGCCTGAGGGAGAGGTCCTGGTGAGAGGgctgctctcctctccctgtacCCCTGAGAGccatgggagggaggaagggctggTTCACACACATATCCTCCAAACTCTGGCTGACAAAGATGACCAGAGTCCCTCAACGGGTGAATATGGGTCAGGGTGGTTCTGCTTGAGGCCATACCCAAGCCCAGTCCCAGTGATCTATACACTAGGCTGGGGGCAGGCATGGTGGGTGGTACCACCTCCAACCCACAGAGAGAACCACGGCTAGGAGGTCACTGAGTACAGGTACAGGGTACAGCTGGTGAGGATGGGGTATTAATCACAGAGCTCCCAAATACTAAGAGACAACTTTCATGTCTAAAGAATGTAACAGAACAGAGACTCAACACTGTTATCCCAATACAGCCAAGGACATTTTGTCTTTCTGTTTTCTCAGTTTTAGTTTGTTCCTTTCCTCCATTGACATTTCTCCTGTTTTcttcaaaaaacaacaaaaaactaaaAGGGTGATTTGAGGTTTCCCAGATGTGGGCACCACTGAATAGAGCCCAAGCTGTATAGTCCAGCGATGcatgagtgagtgtgtatgtatttgtgcccaatagtgtgtgtgagtgtgtgtgagcatgagtgtgtatgtgttgatgtgtgtgtatgagtgtgtatatGTCCTTCTCTCCCTGAACAGGCGAGAGCCAATGCAGACGCCTCATCATCAATACCTttacatcatcctcatcatcaatACCTTTATGTCATCATCAATACCTTTATGTCATCCTCATCATCAATACCTGTATGTCATCCTCATCATCAATACCTTTATATCATCCTCATCATTGCTGTCGTCTTCATTATCATCTGCCTCTgactctctccaccccccccccccctctctctttcttttgatcttccctccatctcctggGCTGCCCTGGTTGTGTTCAGGTCAGGGCAGCCACGAAGGTCCCAAAGCGGTTGGAGATGTCGGAGTGCAGGGAGCGCCAAGAGGAGACGGGCCCCCCTCGGCCCTTACTGTCCCCCAGCTCATCTGTGCAGTGGACGGACAGGCACTGCAGGTGGCTCCCCCCATTGCCCCCTCCGGGCCCCG
>TU1135541
GTTACTCAATAAAACATATACAGATATATACAATATGCAGGAAAACAGACGACTGCACTTTACATAttattaaaaaaagaaaacaaaaaagaaacAGTTCGCACGTTGCCGTCACAGGCCTCCATCTATTGTTTCAGAAATTCAAATTCAACAGAAGCTTTATTTAAAGGTTACAAGATTGCCTAACACACAGCAAATGTTCTCTTATTTTACATGTGCAATACCAATATTCCTTTTTTCAAATCCCTTATTAAATGGTTCCTTGACCTCCCCTACAGTTTACATTGGCTGTATTGTATAACTGTGTTGGAGCCCAAGCTAAATAGAAGAGGAAATGAGTGAAAGAGAGGAATTTGTATTCAGGAATCCCTTTTTGCAGATGCCCACACCAAAAATAaactatttctctctccatctccctcccactCTTCCTCCCCCTGTTTCAGGGTCCAGGCCAGTTCTATTGGACCAGGAGGATGGCCTGGTGAGGTTGTGAGGTACAGTGTCTCAAAAGGTCCAGATCTCATCAGGTTCCTGTGTCTCTGGGTAACAATGGGGTTCCAGGCCTGAGGGAGAGGTCCTGGTGAGAGGgctgctctcctctccctgtacCCCTGAGAGccatgggagggaggaagggctggTTCACACACATATCCTCCAAACTCTGGCTGACAAAGATGACCAGAGTCCCTCAACGGGTGAATATGGGTCAGGGTGGTTCTGCTTGAGGCCATACCCAAGCCCAGTCCCAGTGATCTATACACTAGGCTGGGGGCAGGCATGGTGGGTGGTACCACCTCCAACCCACAGAGAGAACCACGGCTAGGAGGTCACTGAGTACAGGTACAGGGTACAGCTGGTGAGGATGGGGTATTAATCACAGAGCTCCCAAATACTAAGAGACAACTTTCATGTCTAAAGAATGTAACAGAACAGAGACTCAACACTGTTATCCCAATACAGCCAAGGACATTTTGTCTTTCTGTTTTCTCAGTTTTAGTTTGTTCCTTTCCTCCATTGACATTTCTCCTGTTTTcttcaaaaaacaacaaaaaactaaaAGGGTGATTTGAGGTTTCCCAGATGTGGGCACCACTGAATAGAGCCCAAGCTGTATAGTCCAGCGATGcatgagtgagtgtgtatgtatttgtgcccaatagtgtgtgtgagtgtgtgtgagcatgagtgtgtatgtgttgatgtgtgtgtatgagtgtgtatatGTCCTTCTCTCCCTGAACAGGCGAGAGCCAATGCAGACGCCTCATCATCAATACCTttacatcatcctcatcatcaatACCTTTATGTCATCATCAATACCTTTATGTCATCCTCATCATCAATACCTGTATGTCATCCTCATCATCAATACCTTTATATCATCCTCATCATTGCTGTCGTCTTCATTATCATCTGCCTCTgactctctccaccccccccccccctctctctttcttttgatcttccctccatctcctggGCTGCCCTGGTTGTGTTCAGGTCAGGGCAGCCACGAAGGTCCCAAAGCGGTTGGAGATGTCGGAGTGCAGGGAGCGCCAAGAGGAGACGGGCCCCCCTCGGCCCTTACTGTCCCCCAGCTCATCTGTGCAGTGGA
>TU1135545
GTTACTCAATAAAACATATACAGATATATACAATATGCAGGAAAACAGACGACTGCACTTTACATAttattaaaaaaagaaaacaaaaaagaaacAGTTCGCACGTTGCCGTCACAGGCCTCCATCTATTGTTTCAGAAATTCAAATTCAACAGAAGCTTTATTTAAAGGTTACAAGATTGCCTAACACACAGCAAATGTTCTCTTATTTTACATGTGCAATACCAATATTCCTTTTTTCAAATCCCTTATTAAATGGTTCCTTGACCTCCCCTACAGTTTACATTGGCTGTATTGTATAACTGTGTTGGAGCCCAAGCTAAATAGAAGAGGAAATGAGTGAAAGAGAGGAATTTGTATTCAGGAATCCCTTTTTGCAGATGCCCACACCAAAAATAaactatttctctctccatctccctcccactCTTCCTCCCCCTGTTTCAGGGTCCAGGCCAGTTCTATTGGACCAGGAGGATGGCCTGGTGAGGTTGTGAGGTACAGTGTCTCAAAAGGTCCAGATCTCATCAGGTTCCTGTGTCTCTGGGTAACAATGGGGTTCCAGGCCTGAGGGAGAGGTCCTGGTGAGAGGgctgctctcctctccctgtacCCCTGAGAGccatgggagggaggaagggctggTTCACACACATATCCTCCAAACTCTGGCTGACAAAGATGACCAGAGTCCCTCAACGGGTGAATATGGGTCAGGGTGGTTCTGCTTGAGGCCATACCCAAGCCCAGTCCCAGTGATCTATACACTAGGCTGGGGGCAGGCATGGTGGGTGGTACCACCTCCAACCCACAGAGAGAACCACGGCTAGGAGGTCACTGAGTACAGGTACAGGGTACAGCTGGTGAGGATGGGGTATTAATCACAGAGCTCCCAAATACTAAGAGACAACTTTCATGTCTAAAGAATGTAACAGAACAGAGACTCAACACTGTTATCCCAATACAGCCAAGGACATTTTGTCTTTCTGTTTTCTCAGTTTTAGTTTGTTCCTTTCCTCCATTGACATTTCTCCTGTTTTcttcaaaaaacaacaaaaaactaaaAGGGTGATTTGAGGTTTCCCAGATGTGGGCACCACTGAATAGAGCCCAAGCTGTATAGTCCAGCGATGcatgagtgagtgtgtatgtatttgtgcccaatagtgtgtgtgagtgtgtgtgagcatgagtgtgtatgtgttgatgtgtgtgtatgagtgtgtatatGTCCTTCTCTCCCTGAACAGGCGAGAGCCAATGCAGACGCCTCATCATCAATACCTttacatcatcctcatcatcaatACCTTTATGTCATCATCAATACCTTTATGTCATCCTCATCATCAATACCTGTATGTCATCCTCATCATCAATACCTTTATATCATCCTCATCATTGCTGTCGTCTTCATTATCATCTGCCTCTgactctctccaccccccccccccctctctctttcttttgatcttccctccatctcctggGCTGCCCTGGTTGTGTTCAGGTCAGGGCAGCCACGAAGGTCCCAAAGCGGTTGGAGATGTCGGAGTGCAGGGAGCGCCAAGAGGAGACGGGCCCCCCTCGGCCCTTACTGTCCCCCAGCTCATCTGTGCAGTGGACGGACAGGCACTGCAGGTGGCTCCCCCCATTGCCCCCTCCGGGCCCCG

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1135543 False 1656 TUCP 0.46 1 57787468 57789123
TU1135544 False 1704 TUCP 0.47 1 57787468 57789171
TU1135541 False 1624 TUCP 0.46 1 57787500 57789123
TU1135545 True 1672 TUCP 0.47 1 57787500 57789171

Neighbor

gene id symbol gene type direction distance location
LOC110536635 NA coding upstream 490922 57294321 ~ 57296546 (+)
LOC110536634 NA coding upstream 493270 57287724 ~ 57294198 (+)
LOC110536045 NA coding upstream 514910 57261546 ~ 57298041 (+)
LOC110536043 LOC106580381 coding upstream 566270 57174296 ~ 57221198 (+)
LOC110536038 LOC106579834 coding upstream 715039 57044708 ~ 57072429 (+)
LOC110536048 LOC106580394 coding downstream 424072 58213243 ~ 58217300 (+)
LOC110536052 vps33a coding downstream 573834 58363005 ~ 58378703 (+)
LOC110536057 tmed2 coding downstream 595667 58384838 ~ 58388400 (+)
LOC110536055 rabx5 coding downstream 612741 58401912 ~ 58406665 (+)
LOC110536058 psmd9 coding downstream 617770 58406941 ~ 58411547 (+)
G997823 NA non-coding upstream 1537 57785725 ~ 57785931 (+)
G997822 NA non-coding upstream 4024 57782179 ~ 57783444 (+)
G997817 NA non-coding upstream 13320 57773806 ~ 57774148 (+)
G997808 NA non-coding upstream 41455 57745792 ~ 57746013 (+)
G997797 NA non-coding upstream 64989 57722058 ~ 57722479 (+)
G997937 NA non-coding downstream 166361 57955532 ~ 57956099 (+)
G998001 NA non-coding downstream 301987 58091158 ~ 58091444 (+)
G998003 NA non-coding downstream 304439 58093610 ~ 58093826 (+)
G998010 NA non-coding downstream 316347 58105518 ~ 58105728 (+)
G998012 NA non-coding downstream 318833 58108004 ~ 58108225 (+)
LOC110536021 LOC106579845 other upstream 1354197 56386314 ~ 56434657 (+)
LOC110536010 LOC106579856 other upstream 1754932 56028141 ~ 56037300 (+)
G995607 NA other upstream 1782601 56002854 ~ 56004867 (+)
G995364 NA other upstream 2268294 55518709 ~ 55519174 (+)
G998557 LOC106588150 other downstream 512414 58301585 ~ 58302987 (+)
LOC110536086 LOC106580340 other downstream 1574730 59363887 ~ 59371838 (+)
LOC110535084 lnpep other downstream 3405920 61180837 ~ 61206347 (+)
LOC110536169 LOC106580482 other downstream 3998092 61787232 ~ 61802788 (+)
G1002117 NA other downstream 4512006 62301177 ~ 62302835 (+)

Expression


Co-expression Network