Fish Transcriptome and Expression Database

Home /
Search /
- Gene
- RNA
- Bioproject
Expression /
Analysis /
- Coding ability prediction
- Expression count
- Visual Omics
Tools /
- Neighbor
- BLAST
Statistics /
Download /
Help

model fish

XLOC_028881 (BX571711.13)

Basic Information

Item	Value
gene id	XLOC_028881
gene name	BX571711.13
gene type	non-coding
species	zebrafish (Danio rerio)
category of species	model fish

Chromosome Information

Item	Value
chromosome id	NC_007115.7
NCBI id	CM002888.2
chromosome length	78093715
location	31221376 ~ 31221482 (-)
genome version	GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00055909
gtgctcgctacggtggcacatatactaaaattggatcgatacagagaagattagcatggcccctgcgaaaggatgacacgcaaatccgtgaagcgctccatattgtt

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id

ENSDARG00000114561

RNA

RNA id	representative	length	rna type	GC content	exon number	start site	end site
TCONS_00055909	True	107	snRNA	0.48	1	31221376	31221482

Notice the +/- strand.
Display format: symbol/gene id: RNA id. (Except when gene id is similar to RNA id.)
You can browse transcripts by dragging.
A more detailed transcript can be viewed by the zoom button in the upper right corner.

Neighbor

gene id	symbol	gene type	direction	distance	location
XLOC_028880	BX571711.8	coding	downstream	2011	31219259 ~ 31219365 (-)
XLOC_028879	BX571711.18	coding	downstream	2541	31218729 ~ 31218835 (-)
XLOC_028878	BX571711.11	coding	downstream	4658	31216612 ~ 31216718 (-)
XLOC_028877	BX571711.2	coding	downstream	7299	31213971 ~ 31214077 (-)
XLOC_028876	BX571711.14	coding	downstream	8885	31212385 ~ 31212491 (-)
XLOC_028882	BX571711.10	coding	upstream	2006	31223488 ~ 31223594 (-)
XLOC_028883	BX571711.19	coding	upstream	3062	31224544 ~ 31224650 (-)
XLOC_028884	BX571711.5	coding	upstream	6077	31227559 ~ 31227627 (-)
XLOC_028885	NA	coding	upstream	19641	31241123 ~ 31245599 (-)
XLOC_028886	NA	coding	upstream	24259	31245741 ~ 31246667 (-)

Expression

Co-expression Network