G998001


Basic Information

Item Value
gene id G998001
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 58091158 ~ 58091444 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1135731
ACTTACAGCTGTTCTGCAGCAATGGAAGTAAATTAAGCCTTGAAAATTGATGCTAACAATTCCTACAGGTGTCCCAACTTTTGTTGATTACTTACAAAACCTCTGCAATTAACAAAGGTACAGACCATTATAACCCTTAAAAGTGTAGGTCTTTCCTTTAGAGAAATTGCAAAGAAAGCCAATGTGTCAGTGAGTACAGTTTCCTACACCATCAAAAGGCACTTGGAAACTGGAGGAAACTCTGACAGGAAGAGGTCTGGCAGATCCAAAGCCACAAAAGAATCAGA

Function

NR:

description
Transposable element Tc1 transposase

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1135731 True 287 lncRNA 0.39 1 58091158 58091444

Neighbor

gene id symbol gene type direction distance location
LOC110536635 NA coding upstream 794612 57294321 ~ 57296546 (+)
LOC110536634 NA coding upstream 796960 57287724 ~ 57294198 (+)
LOC110536045 NA coding upstream 818600 57261546 ~ 57298041 (+)
LOC110536043 LOC106580381 coding upstream 869960 57174296 ~ 57221198 (+)
LOC110536038 LOC106579834 coding upstream 1018729 57044708 ~ 57072429 (+)
LOC110536048 LOC106580394 coding downstream 121799 58213243 ~ 58217300 (+)
LOC110536052 vps33a coding downstream 271561 58363005 ~ 58378703 (+)
LOC110536057 tmed2 coding downstream 293394 58384838 ~ 58388400 (+)
LOC110536055 rabx5 coding downstream 310468 58401912 ~ 58406665 (+)
LOC110536058 psmd9 coding downstream 315497 58406941 ~ 58411547 (+)
G997937 NA non-coding upstream 135059 57955532 ~ 57956099 (+)
G997823 NA non-coding upstream 305227 57785725 ~ 57785931 (+)
G997822 NA non-coding upstream 307714 57782179 ~ 57783444 (+)
G997817 NA non-coding upstream 317010 57773806 ~ 57774148 (+)
G997808 NA non-coding upstream 345145 57745792 ~ 57746013 (+)
G998003 NA non-coding downstream 2166 58093610 ~ 58093826 (+)
G998010 NA non-coding downstream 14074 58105518 ~ 58105728 (+)
G998012 NA non-coding downstream 16560 58108004 ~ 58108225 (+)
G998013 NA non-coding downstream 17208 58108652 ~ 58109005 (+)
G998482 NA non-coding downstream 132736 58224180 ~ 58224503 (+)
G997824 NA other upstream 301987 57787468 ~ 57789171 (+)
LOC110536021 LOC106579845 other upstream 1657887 56386314 ~ 56434657 (+)
LOC110536010 LOC106579856 other upstream 2058622 56028141 ~ 56037300 (+)
G995607 NA other upstream 2086291 56002854 ~ 56004867 (+)
G998557 LOC106588150 other downstream 210141 58301585 ~ 58302987 (+)
LOC110536086 LOC106580340 other downstream 1272457 59363887 ~ 59371838 (+)
LOC110535084 lnpep other downstream 3103647 61180837 ~ 61206347 (+)
LOC110536169 LOC106580482 other downstream 3695819 61787232 ~ 61802788 (+)
G1002117 NA other downstream 4209733 62301177 ~ 62302835 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
eurasian perch (Perca fluviatilis) G99294 NA non-coding NC_053120.1 CM020917.1 29601137 ~ 29601365 (-)