XLOC_028886


Basic Information

Item Value
gene id XLOC_028886
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007115.7
NCBI id CM002888.2
chromosome length 78093715
location 31245741 ~ 31246667 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00057368
ccaatattatatactgtcatcatggtaaagataaattataagaaattaagttattagaactattatgtttagaaatgtgcctgaacaagtcCTCTCTCCATTAcacataaattgtgaaaaataaactcaaatttaacaggggggcttataattccggCTTCAACTgtgtgcattaataaataaaattcatcacACTAAGACACTGTCTTCTGATAATCACAACTGTGCTCATTTAGGAGCCGGGGAAGCAAAGAGAAGAAAACGTTCCTGTGAAGATCTGTCACAGAAGCCACACTCAGACTCTCCACTGTCTGCTGCTCCTGCGTCGACTTCTTTATTGgaggctcctgcatcagcctcatcagttcctggccagtcttcttcatcggctcctgcatcagcctcgtcATTTCCTGCCTCtgcttcttcatcggctcctgtATCAGCCTCGTCAGTTCCTGCCTTggcttcttcatcggctcctgcatcagcctcgtcATTTCCTGCCTCtgcttcttcatcggctcctgcatcagcctcgtcAGTTCCTGCCTTggcttcttcatcggctcctgcatcagcctcgtcAGTTCCTGCCTTGGCTTCTTCttcggctcctgcatcagcctcgtcAGTTCCTGCCTTGGCTTCTTCttcggctcctgcatcagcctcgtcagttcctgcctcggcttcttcatcggctcctgcatcagcctcgtcagttcctgcctcggcttcttcatcggctcctgcatcagctTCTGTGTCAGCTTCTGACGTTC

Function

GO:

id name namespace
GO:0006082 organic acid metabolic process biological_process
GO:0055114 oxidation-reduction process biological_process
GO:0019441 tryptophan catabolic process to kynurenine biological_process
GO:0044421 obsolete extracellular region part cellular_component
GO:0005576 extracellular region cellular_component
GO:0005615 extracellular space cellular_component
GO:0004497 monooxygenase activity molecular_function
GO:0004833 tryptophan 2,3-dioxygenase activity molecular_function
GO:0016491 oxidoreductase activity molecular_function
GO:0046906 tetrapyrrole binding molecular_function
GO:0008233 peptidase activity molecular_function
GO:0048037 obsolete cofactor binding molecular_function
GO:0020037 heme binding molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00057368 True 785 lncRNA 0.48 2 31245741 31246667

Neighbor

gene id symbol gene type direction distance location
XLOC_028885 NA coding downstream 142 31241123 ~ 31245599 (-)
XLOC_028884 BX571711.5 coding downstream 18114 31227559 ~ 31227627 (-)
XLOC_028883 BX571711.19 coding downstream 21091 31224544 ~ 31224650 (-)
XLOC_028882 BX571711.10 coding downstream 22147 31223488 ~ 31223594 (-)
XLOC_028881 BX571711.13 coding downstream 24259 31221376 ~ 31221482 (-)
XLOC_028887 si:dkey-43f9.4 coding upstream 1301 31247968 ~ 31311955 (-)
XLOC_028888 si:dkey-265e15.5 coding upstream 288782 31535449 ~ 31795106 (-)
XLOC_028889 NA coding upstream 309227 31555894 ~ 31557497 (-)
XLOC_028890 NA coding upstream 379599 31626266 ~ 31628100 (-)
XLOC_028891 si:dkey-72l17.5 coding upstream 697164 31943831 ~ 31993242 (-)
XLOC_028892 NA non-coding upstream 710463 31957130 ~ 31960108 (-)
XLOC_028893 BX649328.2 non-coding upstream 795427 32042094 ~ 32042540 (-)
XLOC_028897 CR450785.15 non-coding upstream 1009605 32256272 ~ 32256435 (-)

Expression


Co-expression Network