G998885


Basic Information

Item Value
gene id G998885
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 58855210 ~ 58857759 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1136691
tgttattgtatgctgtagagttaagatatcccttcactggaactaagggaccgatcccaaaccatgaaaaacagccccagaccattattactcctccaccaaactttacagttggcactatgcatttgggcaggtaacGTTGTCCTGGCGTCCGCCAAACCAAGATTCATCTGTCTGACTaccagatagtgaagcgtgattcatcactccagagtacGTGTTGCCAaagctttacaccacaccagccgactcttggcattgcgcatggtgattttaggcaaAACCTatttcataaagctcccgacgaacagtttgATTCGATTTTTACGTTCTACACGCTCTAGCACTCGGCGGCCCCGTTCTTGTGAGCTtgagtggcctaccactttgcggctgagccgttgttgctccttgaggtttccccttcacaataacagcacttacagttgaccggagcagctctagcagggcagagatttgacgaactgacttgtgtgaaggtttgtctatggagattgcatggctgtttaCTCAATtttctacacctgtcagcaacgggtatggctgaaatagccgaagacactaatttgaagaggtgtctacatacttttgtatatatagtgtattttgaAAGTCAATCACTTCCTGAGCTGTAAATGAGGCATTCAATGTTATTGAGCACATAGACAATACTATTTAGGTTCAGTTCGGAGTTATTTGTTGATGCCTCCGATGAAAAGACTGTAGATATTTGTAATAATATGCTTTGGAAAGAAGGAACATACAGTAGAGTTAGTGATTAATCTTAGGTTTATTCATGCAAATTATGTTTACTTCTTCCCTGTTTCAAAACTGTGTAGCACTATGACTGTAATGGACCACGGAGTACTGAAATGTTAGTGAGAAGGTGAAATGTTACCCACAATCATGCCACATCAGCAGATCCACCATATAGAAAGAATGCCACAATGCATTGACAATCAGTTAGGAAGGCACATGCagcagcagagacagatcctCGTGCTAACACACTCACAAAATGTCTAGGTGCCGTGTGATGAGACATACGGGTAGAAACATTTTCAAAGCACATGATGATCATAGCAAATTGTTTAGACAAATGGGATCTTGGTTGAACGGTCATTACATTTCTGGTGTGATCCAGGGACAGCAAGGAAGACAGTGTGAGGGGTGTATGTGGAGGGAGGACCATCACGGTGAAGTGGGGTCCTCGCTATGCATACAGATTGCTCTGGTAGGGAATGAATGAGGCATCAGGCTGTCTatagccctgtttatacctggtacTAACATGTGCCCCAAGTCCTGATCtggtccacattctgattgtgcccacattttcagaTGGGTGTAGACTATtaaaagacacattgtgatcagatcttcctgaCCCCCTCTGGAGGTAGTTAGGCACGCACTGTGTCTGGATATCAACCAAGTGAAAGCAGATATGGATGGTCAAACCATTTAAATCATTATGCCAGcctctaaaatcattgacaggtaGCACAAGTGACTTATGGCATCagtaaataaatgtaaataaacatttaatttgtattattttgaaagaatatcTCTCAAATACTTCGCATACAGGGAGGCATCAGCTAATCTGGTCACAGTACGGACacgagctgggcgatatggacaaaaatcTATATTACGATAAATTGACAAAATTATCACGTTAACGATAAGTTGAATGAAATGTATAAGCACCAGTAATTATTTTACCCTGTCAACTACCCCTACAACTTTGAATGTTATCAATTGTTCCATTAGCAATATTAGCAGACAGGCCTATTTCATTACAACTTCACATTCCTCTAGTAAAAGGCTACTTAGCGTTATCAGTCCTCGATAAACTGAATATTATCGAAACCGACCatttatcgtcccagctctagtAGACACGACTAACATTAAGAGTGATTGGATCACCCAACTCACATGTTAGAGCAAGGTTTACATGAGGCTATTGTGAACCCAATGTTCTAGAATCCTTGCTTTACCACCAATTCATCTCATACATATAATATGAGATCATGCTATTCCTGTCCATTGCCCTACTATAGGCATATTTCAGGGTGACCCAGAAAGCATCGCCCCAAATACACATGAACATGCAACAGGCATGGTAAAGGATGCAGTCAGTTGAGCTGGAAGGGCTTGTGTTGTGAATCAATGCCGTTGTAACTGATACTTTGGGCTACGAGTCACTGTTCATATGATATGCTTGACCTTTTTTAAAAGTCGCTCATAACTATGGGGAACCCATATGGATTTTCTGTAGACAACACGGAGTCTTTCTGTGCATCCTAACAGTGAAATTGGAGAAGACTGGTTAGCACATCCAGCTAAAAGAAAACATACACCCCTCTAACAATTATTACATGGCTGCTCTTTAAAGCATCGTCCTGCTCCAGAGATACTGTATCAGTCAACTGGACATTGACACCCCAAGAATGTAAAGATATTGTGCAATCATCAGTTAAACTCAGACACATCTGGACAAAGACATTCCCC

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1136691 True 2550 lncRNA 0.42 1 58855210 58857759

Neighbor

gene id symbol gene type direction distance location
LOC110536071 pitpnm2 coding upstream 3891 58762601 ~ 58851319 (+)
rilpl2 LOC106580358 coding upstream 132423 58720940 ~ 58724224 (+)
LOC110536067 LOC106580357 coding upstream 134726 58692093 ~ 58720484 (+)
hip1rb hip1r coding upstream 164852 58649753 ~ 58690358 (+)
kntc1 kntc1 coding upstream 213306 58619847 ~ 58641904 (+)
mob1a LOC101160416 coding downstream 10235 58867994 ~ 58881986 (+)
LOC110536072 LOC106580351 coding downstream 26001 58883760 ~ 58889515 (+)
smtnb LOC106580347 coding downstream 32541 58890300 ~ 58955743 (+)
LOC110536079 LOC106580349 coding downstream 99148 58956907 ~ 59002382 (+)
LOC110536081 LOC106580346 coding downstream 160493 59018252 ~ 59024137 (+)
G998928 NA non-coding upstream 33658 58821337 ~ 58821552 (+)
G998846 NA non-coding upstream 172590 58675749 ~ 58682620 (+)
G998785 NA non-coding upstream 270104 58584324 ~ 58585106 (+)
G998887 NA non-coding downstream 1638 58859397 ~ 58860258 (+)
G998886 NA non-coding downstream 2870 58860629 ~ 58862743 (+)
G998957 NA non-coding downstream 37322 58895081 ~ 58895382 (+)
G998970 NA non-coding downstream 58696 58916455 ~ 58916674 (+)
G998949 NA non-coding downstream 147709 59005468 ~ 59006695 (+)
G998557 LOC106588150 other upstream 552223 58301585 ~ 58302987 (+)
G997824 NA other upstream 1066039 57787468 ~ 57789171 (+)
LOC110536038 LOC106579834 other upstream 1791630 57044708 ~ 57072429 (+)
LOC110536021 LOC106579845 other upstream 2421939 56386314 ~ 56434657 (+)
LOC110536010 LOC106579856 other upstream 2822674 56028141 ~ 56037300 (+)
LOC110536086 LOC106580340 other downstream 506142 59363887 ~ 59371838 (+)
LOC110535084 lnpep other downstream 2337332 61180837 ~ 61206347 (+)
LOC110536169 LOC106580482 other downstream 2929504 61787232 ~ 61802788 (+)
G1002117 NA other downstream 3443418 62301177 ~ 62302835 (+)
LOC110536190 LOC103397138 other downstream 3633422 62490915 ~ 62494341 (+)

Expression


Co-expression Network