XLOC_028887 (si:dkey-43f9.4)


Basic Information

Item Value
gene id XLOC_028887
gene name si:dkey-43f9.4
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007115.7
NCBI id CM002888.2
chromosome length 78093715
location 31247968 ~ 31311955 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00055913
ActgcgctgtgattcaactgaagaaaggataaagtgtccaaacacagagaaaaactcctgcttgagcgactgatctccacactgttataaagatggcgtttattaaagaggagagtgaagatgtgaagattgaagaaacattcacagtcaaacaggaagatctgcaggaacaaacagGTGAATTAGACATGGATCCACTGTTGCCCACCCTGAGCATCGTTGACACCAGTGTGCCACAGGACAGACAACAGTGCTTTCTTAAAGCATCGAAGGACGCCAAGACCCTGGCCTCTCGCAACAGGTGCTTCGAGCGGAACACTAGCCAGGACAAAAAAACTGCTTGTGAGGAAGCTAAAAAAAGATGCCAGCACATTACTTGTGCGCCATCTGAGGTCCAGTATCTCGGCCAGCTCATTCTAAACTTTGGCAAGTACAATGGACAAAGTTTTAAATGGCTGGTGGAGAATGACGTTGGCTACATTAAATATGTGCTGGATCTACACATCAAGGAGCGTCGCCATCAAGGAAGAAAAGAGGGCCCAGGTGAGTATATAAAGGACCTTCTGTTACAGTATGTGCAACTGTTTCCACAGGTTTCCTGCCACCTCGAGGTCAATGTCGACAGTGCCATCTACGGTCAGGGCCGCTTCAGATCCTTCACGTTCCTGGAGATGTGGCAGTGGTACAGCCTGCACAAGACCCTGCAGGCGGATCCACAAGCTGGTAGTGCCCAAGAAAAGAAGATGGCACAGGAGGCGTTCTGCTCTGTGCGGCAGTGGCTGACGATGAAGGAGGAGGA
>TCONS_00055914
acCAGATGCTAAATGATATACCTGCTGTTGGCATagatgataaagtgtccaaacacagagaaaaactcctgcttgagcgactgatctccacactgttataaagatggcgtttattaaagaggagagtgaagatgtgaagattgaagaaacattcacagtcaaacaggaagatctgcaggaacaaacagacctaagaGAGAATGAGGGgaggaaagaggaggaacatcatgtcaaaattgaggaaaaaaacaatttacatactgatggtattttgaaaaggacaGACAAGACTCGTTTCACTTGCACTCACTGTAGAaggagttttggaagaaaaggctatcttaagattcacatgatgatccacactggagagaaaccattcacatgcactcagtgtgggaagagtttcagctgctcatcacaccttaatctacacatgatgatccacactggagagaaaccattcacgtgcactcagtgtggaaaaagtttcaggaaatcatcacaccttaataaacacatgatgagccacactggagagaaaccattcacttgcactcagtgtgggaagagtttcagtcaatCATCATCCcgtaataaacacatgaggatccacactggagagaaaccattcacatgcactcagtgtggaaagagttttagccAATTATCAttccttaatcaccacatgatgatccacactggagagaaaccattcacatgccctcagtgtgggaagagtttcagcaaatcgtCAAactttaatcaacacatgagaatccacactggagagaaaccattcacatgcactcagtgtgggaagagttttagccaatcatcacaccttaataaacacatgaggatccacactggagagaaaccattcacatgcactcagtgtggaaagtgtTTTACCTGCAtatcaaaccttaatcaacacatgaggatccacaccggagagaaaccattcatatgcactcagtgtgggaaaagtttcagccAGTTAACAtcccttaattaccacatgaAGTTCCACGCTGGAGAGATAGAGTTCACTTATACTTAAGCCacagtcacactggactttttataacttgacctctctggacagaaatgtaaaatatggaccagtcGCTCACTTGACCccctggggtcgaagaccgcgtatacgcgttctgacaagtttttacctcattgagctgaaatgaacctaaattacactttcagttttgatcgtacagataagatcaatacatcaatcgaatctgttaggtgtctacttttaaatgtgtacactcacaacaaaaacaaagtagTGTGCTTTTGTAAAACaaggataataaacagtgtaggcattctgtcttttctctctccgtgaactgtttttagaaacgcgtcagtaaaatgcgctAAAACTCAGCttaaacgcagctatgcatgttgaaaacaaatattgtttgataaaaTAATCAGTATGAAAGCAACGCTATGTCTAGcttctcagtctgagctcattagagttaatgcgaccacgcccacgaAGCTTTGACATTACAAACAGCCTGCATGAGGAGCGCGCAACAGTAGACTGTGTCAGGAAAAACAcgtcattaaaatgaactgaaactcagCAAATACTCAACAAAGAAACATGTGAGATGTTTCTAaagaaagcttgatatgtctacttttgcgaTAAGTCTTACGATAAGTCTTATTCTAACGTTTatgacctttatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatata
>TCONS_00055915
tgcttgagcgactgatctccacactgttataaagatggcgtttattaaagaggagagtgaagatgtgaagattgaagaaacattcacagtcaaacaggaagatctgcaggaacaaacagacctaagaGAGAATGAGGGgaggaaagaggaggaacatcatgtcaaaattgaggaaaaaaacaatttacatactgatggtattttgaaaaggacaGACAAGACTCGTTTCACTTGCACTCACTGTAGAaggagttttggaagaaaaggctatcttaagattcacatgatgatccacactggagagaaaccattcacatgcactcagtgtgggaagagtttcagctgctcatcacaccttaatctacacatgatgatccacactggagagaaaccattcacgtgcactcagtgtggaaaaagtttcaggaaatcatcacaccttaataaacacatgatgagccacactggagagaaaccattcacttgcactcagtgtgggaagagtttcagtcaatCATCATCCcgtaataaacacatgaggatccacactggagagaaaccattcacatgcactcagtgtggaaagagttttagccAATTATCAttccttaatcaccacatgatgatccacactggagagaaaccattcacatgccctcagtgtgggaagagtttcagcaaatcgtCAAactttaatcaacacatgagaatccacactggagagaaaccattcacatgcactcagtgtgggaagagttttagccaatcatcacaccttaataaacacatgaggatccacactggagagaaaccattcacatgcactcagtgtggaaagtgtTTTACCTGCAtatcaaaccttaatcaacacatgaggatccacaccggagagaaaccattcatatgcactcagtgtgggaaaagtttcagccAGTTAACAtcccttaattaccacatgaAGTTCCACGCTGGAGAGATAGAGTTCACTTATACTTAAGCCacagtcacactggactttttataacttgacctctctggacagaaatgtaaaatatggaccagtcGCTCACTTGACCccctggggtcgaagaccgcgtatacgcgttctgacaagtttttacctcattgagctgaaatgaacctaaattacactttcagttttgatcgtacagataagatcaatacatcaatcgaatctgttaggtgtctacttttaaatgtgtacactcacaacaaaaacaaagtagTGTGCTTTTGTAAAACaaggataataaacagtgtaggcattctgtcttttctctctccgtgaactgtttttagaaacgcgtcagtaaaatgcgctAAAACTCAGCttaaacgcagctatgcatgttgaaaacaaatattgtttgataaaaTAATCAGTATGAAAGCAACGCTATGTCTAGcttctcagtctgagctcattagagttaatgcgaccacgcccacgaAGCTTTGACATTACAAACAGCCTGCATGAGGAG

Function

symbol description
si:dkey-43f9.4 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription, DNA-templated.

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDARG00000100479

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00055913 False 799 mRNA 0.49 5 31247968 31311955
TCONS_00055914 False 1814 mRNA 0.38 3 31302460 31311871
TCONS_00055915 True 1505 mRNA 0.41 2 31302700 31311428

Neighbor

gene id symbol gene type direction distance location
XLOC_028886 NA coding downstream 1301 31245741 ~ 31246667 (-)
XLOC_028885 NA coding downstream 2369 31241123 ~ 31245599 (-)
XLOC_028884 BX571711.5 coding downstream 20341 31227559 ~ 31227627 (-)
XLOC_028883 BX571711.19 coding downstream 23318 31224544 ~ 31224650 (-)
XLOC_028882 BX571711.10 coding downstream 24374 31223488 ~ 31223594 (-)
XLOC_028888 si:dkey-265e15.5 coding upstream 223494 31535449 ~ 31795106 (-)
XLOC_028889 NA coding upstream 243939 31555894 ~ 31557497 (-)
XLOC_028890 NA coding upstream 314311 31626266 ~ 31628100 (-)
XLOC_028891 si:dkey-72l17.5 coding upstream 631876 31943831 ~ 31993242 (-)
XLOC_028892 NA coding upstream 645175 31957130 ~ 31960108 (-)
XLOC_028893 BX649328.2 non-coding upstream 730139 32042094 ~ 32042540 (-)
XLOC_028897 CR450785.15 non-coding upstream 944317 32256272 ~ 32256435 (-)

Expression


Co-expression Network