XLOC_028889


Basic Information

Item Value
gene id XLOC_028889
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007115.7
NCBI id CM002888.2
chromosome length 78093715
location 31555894 ~ 31557497 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00058244
gaccgtaggggggataagtggcaatagaacacagccaggaactcttCTGCGCGAGTCAGCGTGATGTGCGTGCGCGGGCTCATCATTTGAATTAAATAACGGACACAAGCAACGGGCGGAACGGTAATCAAAGGTAAGTAAGTTACGATATTCGACGTTTCACATGTTTTATTTGTCGTTTTACTTATAATTTATGTTGAATTGAACTTTAGATGTGTaacgttttacattataataatttttaaatgaacacttAACCACTTTATACGTTTTTATGTCGCCCTGTAGTGACGAGGTCATTGACAGCAGCTAATGAATAATAGctgttttggttatttatttggcGATTTCagcaaaattacttaattttatgtCTTCATTGCTTTCTAACCTGTGTAAAAATATAAGATGATCTGTTAAATCGACTTGGAATGAGCATAAAATATTGCTCCGGCTATAACGTTAAAGGCTAACTTAACGTTATAAGAATTAAGCACTTCGCAAATAGCATTAATGGTGCTTATCATCGAgctaacattttttaacatgtaaTAATCCTAACAAAGTGAATCGCTGTCGGTTCACGGTTTTGTTGCTCTGTTTGTAAATTTAGTGATGGTCTCCTCGCCAGAGAAGCTAGCAGCATTCAATGGGGAAGCTTTGCTATTTCGTAAGTTGTCTAACGTTACCCTATCGCTAGTCAAGTTAATTCTTTGTGGTTTCATTCTTTTCTGATTTCCTTTGTTCACAAACCATGCTTGTctgtttttttctgattgctGTGCTATGTTCTGGTGtaagttttttttcctgtttattaaaaataattttgtctaCATCCTTCTCTTTCGATTCACGTTAATGCAGTTTACTCATAaaagtatctttaaaaatgtttgtaaacgcattcattttttttattatatcatgaagctttttataatttcacaaggaaatgcaatccaaacaagaTCATTGGATTTCTCACAAAATACCATGCAAAAATATACTGAGAGAGGAGTCAAAATTTTGGCTAGTTTATGGTACAGATACTGTGGATTGGACATTTATATTAATGGAATTGTAATAGTAGATACCAGGTGAGATGTCATACtgattaatatgttatttttctTATAACTTTTTTATGGCAGTTTCGCTGGAATCTCCAATTGAAAACATCATCGTGTGCGCTTAGACTTCTGTTCCAGTTCTGACTACACCACACTCTGCTTATGTGGATCACTGACTACTATGTTCTCTgaaggtattcattcattcatttattaattcagtcatttattcattttcttttcggcttagtgcctttattaatctggggtcaccacagcggaatgaaccgccaacttatccagcacgtttttatgcagcggatgcccttccagcctcaatccatctctgggaaacatccacactcattcactacggacagttttagcctacccaatttacttgtaccgcatatctttggacagtgggggaaaccggagcacctggaggaaacccacgcaaactccacac
>TCONS_00055918
cttaatgctttttttatattcaataattccaactttgaatgttagaatgttctaaatgaatagaccgtaggggggataagtggcaatagaacacagccaggaactcttCTGCGCGAGTCAGCGTGATGTGCGTGCGCGGGCTCATCATTTGAATTAAATAACGGACACAAGCAACGGGCGGAACGGTAATCAAAGTGATGGTCTCCTCGCCAGAGAAGCTAGCAGCATTCAATGGGGAAGCTTTGCTATTTCTTTCGCTGGAATCTCCAATTGAAAACATCATCGTGTGCGCTTAGACTTCTGTTCCAGTTCTGACTACACCACACTCTGCTTATGTGGATCACTGACTACTATGTTCTCTgaagtgggggaaaccggagcacctggaggaaacccacgcaaactccacac

Function

GO:

id name namespace
GO:0004520 endodeoxyribonuclease activity molecular_function
GO:0016788 hydrolase activity, acting on ester bonds molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00058244 False 1542 lncRNA 0.37 1 31555894 31557435
TCONS_00055918 True 411 lncRNA 0.46 4 31555894 31557497

Neighbor

gene id symbol gene type direction distance location
XLOC_028887 si:dkey-43f9.4 coding downstream 243939 31247968 ~ 31311955 (-)
XLOC_028886 NA coding downstream 309227 31245741 ~ 31246667 (-)
XLOC_028885 NA coding downstream 310295 31241123 ~ 31245599 (-)
XLOC_028884 BX571711.5 coding downstream 328267 31227559 ~ 31227627 (-)
XLOC_028883 BX571711.19 coding downstream 331244 31224544 ~ 31224650 (-)
XLOC_028890 NA coding upstream 68769 31626266 ~ 31628100 (-)
XLOC_028891 si:dkey-72l17.5 coding upstream 386334 31943831 ~ 31993242 (-)
XLOC_028892 NA coding upstream 399633 31957130 ~ 31960108 (-)
XLOC_028893 BX649328.2 coding upstream 484597 32042094 ~ 32042540 (-)
XLOC_028894 BX649328.3 coding upstream 539314 32096811 ~ 32097405 (-)
XLOC_028882 BX571711.10 non-coding downstream 332300 31223488 ~ 31223594 (-)
XLOC_028897 CR450785.15 non-coding upstream 698775 32256272 ~ 32256435 (-)
XLOC_028898 CR450785.7 non-coding upstream 700085 32257582 ~ 32257730 (-)

Expression


Co-expression Network