G999476


Basic Information

Item Value
gene id G999476
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 59415416 ~ 59416733 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1137366
TGTGTAAGTCTCTTTTAATATAAAACATTAAATATGCAACCAAACCGTGGGCGCTAGTCAGAATCAACTTCTAACTGGCTGGATCAATTTGGATTAAAAGGTACATTTTACAGTACATTTTAATTAAAACTTCAGATTTCAactacacacaacttattattcAGATTATTATAACTCTTCGTTTTATAATCATATTATTGTCTTGGTATTATCTTATCACAAAATATACACACAGAAGGCCAGACAGTGGGTACAATACTTCCAGCCCAAATTCTACATTCCTAACAGTAATTACAAAATAATCATCTCCCCTAAGACATGAAGTGCACAAGTCAGGGGACTTCTCCCTTATTCAGTTTCTTAAAGGCAAAATACTGACAGTGTCTTCACCAGCTGATCCCAGATCAACCTGTCCACAGCTCTTCAACACTGGGATTCAGGACCAGGTTTAAGCTCAGGTGAACCTGGATCAGTGCCTGGGAGTCAGTGTCCCCACTAGCAGCCCTTCCTGGCTGCAGCTCACTGAACAGTGGTGTGCTATGGGAGGCCTGAGCAgcatgctctgtctgtctgtagtaagaTGCCAATATGCTGTCAGTAGCCACCATGGGCTTTCTTCAGCGCTATAGCAACATCAGACAGTTCTGTATAAATGCATCTACAGGTCCAGAGCAGACTGATCTGTCATGTAGGCTGTAGAACTATACACTGTGGTGTAGAATTCACACTCTGCCTAGATATTAATGTGTGGGATGATGGATTAGTTTTAGGGATGTGTAGGTTCTAGCTACAATACACTTTATATCCTGTAAATGACTCACTGCACGATATAAGTGTTATATGTGTTTCAATGGTAAAGCACCAAAGGACTGGGTGTGTGCAGTGCACAGGCTGAAGTCTCCTCAACATCAACACAGATATGGATTAGGCTGTGGAAACCTACAGTGAAAAGTGCTCATTTACCTCCATAGATACAGCTTCAATTACCAGTGGAGTGAAAGTGGGACAGTGTTTGGATGGTAATATGTCACAACATACCTAGTTTGTGTGAGGAAAAGTACTCTGGTTGTGTGGTTCTCTCTGAGCTAACTCCGTCCGAGAGCAACTCCAGACAGGTCGTTCAATACAGGCCTCAATCAACTATCATTATTATattagcctagttaaataaaggttaaatgtattTAACTATCACAGTCCCTATATCTGCTGCTAACAACAGAGGAAGCAGCCTTGGGACCATGTCACTCAACATCTAATatggttatactgtatgtacagtgccgtgaagaagtatttgccccctttctgattttct

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1137366 True 1318 lncRNA 0.41 1 59415416 59416733

Neighbor

gene id symbol gene type direction distance location
LOC110536090 LOC106580338 coding upstream 22213 59389200 ~ 59393203 (+)
LOC110536086 LOC106580340 coding upstream 43967 59363887 ~ 59371838 (+)
LOC110536085 LOC106580341 coding upstream 52001 59172559 ~ 59363415 (+)
LOC118937474 NA coding upstream 148106 59267256 ~ 59267310 (+)
LOC110536084 LOC106580343 coding upstream 294520 59082752 ~ 59120896 (+)
trnaa-ugc-51 NA coding downstream 99388 59516121 ~ 59516196 (+)
rhbdd3 rhbdd3 coding downstream 229092 59645825 ~ 59650996 (+)
LOC110536104 LOC106580322 coding downstream 423645 59840378 ~ 59848113 (+)
LOC110536105 LOC106580320 coding downstream 466796 59883529 ~ 59931922 (+)
LOC110536106 LOC106580319 coding downstream 558581 59975314 ~ 60109794 (+)
G999496 NA non-coding upstream 12597 59402458 ~ 59402819 (+)
G999495 NA non-coding upstream 13192 59401791 ~ 59402224 (+)
G999374 NA non-coding upstream 29829 59384812 ~ 59385587 (+)
G999487 LOC106580334 non-coding upstream 38740 59376430 ~ 59376676 (+)
G999477 NA non-coding downstream 1952 59418685 ~ 59419194 (+)
G999478 NA non-coding downstream 4130 59420863 ~ 59421573 (+)
G999506 NA non-coding downstream 11207 59427940 ~ 59429682 (+)
G999566 NA non-coding downstream 106255 59522988 ~ 59523326 (+)
G999567 NA non-coding downstream 106982 59523715 ~ 59523948 (+)
G998557 LOC106588150 other upstream 1112429 58301585 ~ 58302987 (+)
G997824 NA other upstream 1626245 57787468 ~ 57789171 (+)
LOC110536038 LOC106579834 other upstream 2351836 57044708 ~ 57072429 (+)
LOC110536021 LOC106579845 other upstream 2982145 56386314 ~ 56434657 (+)
LOC110535084 lnpep other downstream 1778358 61180837 ~ 61206347 (+)
LOC110536169 LOC106580482 other downstream 2370530 61787232 ~ 61802788 (+)
G1002117 NA other downstream 2884444 62301177 ~ 62302835 (+)
LOC110536190 LOC103397138 other downstream 3074448 62490915 ~ 62494341 (+)
G1004025 LOC106580455 other downstream 4139232 63555965 ~ 63558816 (+)

Expression


Co-expression Network