XLOC_028891 (si:dkey-72l17.5)


Basic Information

Item Value
gene id XLOC_028891
gene name si:dkey-72l17.5
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007115.7
NCBI id CM002888.2
chromosome length 78093715
location 31943831 ~ 31993242 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00055932
gaagaggaagaggaggcgGAGGATGTCCGGTTTACTCGTGATGAGCTTCTAGATTTGAGTGTCTCAGCTGCTGATCTTTTCCTGCATTCAGCTGAATTATGAAGGCTGATCAATGACTGGAGATCTGTGATTGTTCATCAGTTTCTTCTAGAGTTTCTACTGGAGATCAAACTCTTCAGAtccatcatggaggacacacacacacctagagaGCAGGATTTGTCTACAGGATGCAGttcagttcatcagaagagagcagaagcagagcccagctgtgtgtctatgaagagtgacgcgtCTATGGATCCACCAATGAAATTTAAGAGTGAAAACACAGaacctgctgtcagtgtggatggagatgatcagactggagacctgcagcaggattcactccaaccagaacatgatgaacttcagagagtcaaagagcagcacaaaaccagcatgaagaacaagtatgagagattatttgagggaatcaaacatggagagactcaaaccctcctgaacaggatctacacacagctctacatcatagaaggagagactgaaggagtgaatgaagaacatgaggttttacagatggagaaaagagccagaacaaaaccctcacaacacactccagtctactgcaatgacatctttaaagcctcagctggagcaggacatggggagaagatcaagaaggagaaagcccagatcaagactgttctcactaaaggcatcgctggaatcgggaaaaccgtctctgtgcaaaagttcattctggactgggccgagggaaaagaccataaggatgtagatttcatgtttgtgcttccatttcgagagctgaacttgatcagagatcatcagtacagtcttcacagacttctgctggactttcatcctgaacttgaagatctggagcccaagatttatgagcagtgtagagttgtgatcatctttgatggtctggatgaaagcagaatcacactgaagttttcagatgaggagaaagtttgtgctgtgactgaatctttATCAGATAGAcagaaagtttgtgctgtgactgaatcttcatcagtggctgtgttgatgtggagcctcctgaaaggagatctgcttccctctgctctcatctggatcacctccagaccagcagcagcccatcagatcccctccagatacatcaagcgtctgacagaaattcagggattcactgagcctcagaaggaggaatatttcaggaagagaatcagcaaccagcatcaagccagcagaatcatctcccacatcagaagagcaagaagcctccagatcatgtgccacatacctgtcttctgctggatctcctccactgtgcttcagaagctcctggaagaagatgtgagtgcagaaatccctcaaactctgactgagatgtacatccacttcctgctgattcagatcaacatgaggaagcagaagtatgaagagagagatccagagaaactcctgcagtccaacagaggagtgatcctcaaacttgctgaagtggctttcagacagctgatgaagggcaatgtgatgttctatgaggaggacctgactgagagcggcatagacgtcactgacgcctcagtgtattctgggatctgcactgagatcttcaaggaggaatctgtgattcatcagaggaaagtctacagcttcatccatctcagctttcaggagtttctggctgctttctttgtgttttactgccatttaacagagaacagagaaccgcTGAAGTTAATTTTAGAATATTCATATGATCAATATCTACAGTCCAGCTCTGAGAAGTCTCTGTATGATCTGCTCAGTTCAGTAGTAGATAAAGCTGTCaggagtagtaatggtcatctggatctgttcctgcggttcctgctgggcgtctcactggagtccaatcagagactcttccaggatctgctgacacacacagagaagagctCAGAGAACATCAGGAGAATCACACAGCACATTAAAGACATGATCAAGAGAGATAACCgtctctcagctgaaagatccatcaatctgttcctctgtctgctggaggtgaaagatcagactctggccagagagattcaggagtttgtgaaatcagacaaacactcagaggagaaactctctcctgctcactgctcaacaatctcctacatgattgagatgtcagaggagccgctggatgagttagactttaataaattcaacacatcagatgagggaagacggagactgacagcagctgtgagaaactgcagaagagctctactacagagctgtaatctcactgttcagtgctgtgagagtttgtcttccgttctacaatcctcaaactgtgtgctgagagagctggacctgagtatcaatgatctgcaggattcaggagtgaagcttctttCTGATGGACTGAGGagtccaaactgtaaactggagacactgaggctactgttctgtaatctcactgttcagtgctgtaagagtttgtcttcagctctacaatcctcaaactgtgtgctgagagagctggacctgagtaacaatgacctgcaggattcaggagtgaagcttctctctgatggactgaagagtcaacactgtaaactggacacactgagattggtcatgtgtaaactcactgttcagtgctgtgagagtttgtcttcagctctacaatcctcaaactgtgtgctgagagagctggacctgagtaacaatgacctgcaggattcaggagtgaagaagctctctgatggactgaagactgtaaactgtaaactggagacactgagattgtctggctgtatggtgacaaaggaaggctgtggttttctgtcttcagctctgatttcaaacccctcacacctgagagagctggatctgagctacaatcatccaggagattcaggagtcaagctgctctctgaacaactggaggatccaaactacacactggacaaactcaatctggatcatggaggacacacgaggattacagcaggaccacgcaaatatgtctgtttcctcactctggatccaaacacagcaaacactcaactcattctgtctaaggagaacagagaggtgaagagtgtgagagagaatcagctgtatcctgatcatccagacagatttgatgattatcctcaggtgttgtgcagagagagtgtgtgtggacgctgttactgggagattgagtGGAGTGGAGATCatggtgtgtgtatatcagtgtcatataagagcatcaggaagAAGGGAAGAGGTGTTGAGTGTTTGTTTGgatgtaatgctcagtcctggagtttgcgcTGCTCTTCCTTCAGTTTTAtattcagacacaataacacacagACTGATCTCCCAGTAaaggcgctcagcaggagaataggagtgtttgtggatcacagtgcaggaactctgatcttctacaacatctatagagacacaatgagcctcatccactcagtccagaccacattcactgagccgctctgccctgggtttggGCTTGTTTATTCTGGATCaacagtgaaactgagctgaagactgatgagagatttacccagaatcctctgcaggagcagtcacaGCAGTGAGATGATCTGGTGTCTTttctttgtgtgtctgtgtaagagagagagtgtgtgtgtgtgtgtgtgagagagagtgtctgtgtgtgtgtgtgtgtgtgtgtgtgtgtaagagtttgtattagtg
>TCONS_00055933
atgaagaacaagtatgagagattatttgagggaatcaaacatggagagactcaaaccctcctgaacaggatctacacacagctctacatcatagaaggagagactgaaggagtgaatgaagaacatgaggttttacagatggagaaaagagccagaacaaaaccctcacaacacactccagtctactgcaatgacatctttaaagcctcagctggagcaggacatggggagaagatcaagaaggagaaagcccagatcaagactgttctcactaaaggcatcgctggaatcgggaaaaccgtctctgtgcaaaagttcattctggactgggccgagggaaaagaccataaggatgtagatttcatgtttgtgcttccatttcgagagctgaacttgatcagagatcatcagtacagtcttcacagacttctgctggactttcatcctgaacttgaagatctggagcccaagatttatgagcagtgtagagttgtgatcatctttgatggtctggatgaaagcagaatcacactgaagttttcagatgaggagaaagttttttgtgctgtgactgaatcttcatcagtggctgtgttgatgtggagcctcctgaaaggagatctgcttccctctgctctcatctggatcacctccagaccagcagcagcccatcagatcccctccagatacatcaagcgtctgacagaaattcagggattcactgagcctcagaaggaggaatatttcaggaagagaatcagcaaccagcatcaagccagcagaatcatctcccacatcagaagagcaagaagcctccagatcatgtgccacatacctgtcttctgctggatctcctccactgtgcttcagaagctcctggaagaagatgtgagtgcagaaatccctcaaactctgactgagatgtacatccacttcctgctgattcagatcaacatgaggaagcagaagtatgaagagagagatccagagaaactcctgcagtccaacagaggagtgatcctcaaacttgctgaagtggctttcagacagctgatgaagggcaatgtgatgttctatgaggaggacctgactgagagcggcatagacgtcactgacgcctcagtgtattctgggatctgcactgagatcttcaaggaggaatctgtgattcatcagaggaaagtctacagcttcatccatctcagctttcaggagtttctggctgctttctttgtgttttactgccatttaacagagaacagagaaccgcTGAAGTTAATTTTAGAATATTCATATGATCAATATCTACAGTCCAGCTCTGAGAAGTCTCTGTATGATCTGCTCAGTTCAGTAGTAGATAAAGCTGTCaggagtagtaatggtcatctggatctgttcctgcggttcctgctgggcgtctcactggagtccaatcagagactcttccaggatctgctgacacacacagagaagagctCAGAGAACATCAGGAGAATCACACAGCACATTAAAGACATGATCAAGAGAGATAACCgtctctcagctgaaagatccatcaatctgttcctctgtctgctggaggtgaaagatcagactctggccagagagattcaggagtttgtgaaatcagacaaacactcagaggagaaactctctcctgctcactgctcaacaatctcctacatgattgagatgtcagaggagccgctggatgagttagactttaataaattcaacacatcagatgagggaagacggagactgacagcagctgtgagaaactgcagaagagctctactacagagctgtaatctcactgttcagtgctgtgagagtttgtcttccgttctacaatcctcaaactgtgtgctgagagagctggacctgagtatcaatgatctgcaggattcaggagtgaagcttctttCTGATGGACTGAGGagtccaaactgtaaactggagacactgaggctactgttctgtaatctcactgttcagtgctgtaagagtttgtcttcagctctacaatcctcaaactgtgtgctgagagagctggacctgagtaacaatgacctgcaggattcaggagtgaagcttctctctgatggactgaagagtcaacactgtaaactggacacactgagattggtcatgtgtaaactcactgttcagtgctgtgagagtttgtcttcagctctacaatcctcaaactgtgtgctgagagagctggacctgagtaacaatgacctgcaggattcaggagtgaagaagctctctgatggactgaagactgtaaactgtaaactggagacactgagattgtctggctgtatggtgacaaaggaaggctgtggttttctgtcttcagctctgatttcaaacccctcacacctgagagagctggatctgagctacaatcatccaggagattcaggagtcaagctgctctctgaacaactggaggatccaaactacacactggacaaactcaatctggatcatggaggacacacgaggattacagcaggaccacgcaaatatgtctgtttcctcactctggatccaaacacagcaaacactcaactcattctgtctaaggagaacagagaggtgaagagtgtgagagagaatcagctgtatcctgatcatccagacagatttgatgattatcctcaggtgttgtgcagagagagtgtgtgtggacgctgttactgggagattgagtGGAGTGGAGATCatggtgtgtgtatatcagtgtcatataagagcatcaggaagAAGGGAAGAGGTGTTGAGTGTTTGTTTGgatgtaatgctcagtcctggagtttgcgcTGCTCTTCCTTCAGTTTTAtattcagacacaataacacacagACTGATCTCCCAGTAaaggcgctcagcaggagaataggagtgtttgtggatcacagtgcaggaactctgatcttctacaacatctatagagacacaatgagcctcatccactcagtccagaccacattcactgagccgctctgccctgggtttggGCTTGTTTATTCTGGATCaacagtgaaactgagctga
>TCONS_00058249
gtgtgtgcagcgctgaactttaatcttctctgttttagttcagttcatcagaagagagcagaagcagagcccagctgtgtgtctatgaagagtgacgcgtCTATGGATCCACCAATGAAATTTAAGAGTGAAAACACAGaacctgctgtcagGTACACAACTTGCATCCTACAACATCCAGAGTAAGCGCAACTGTGAGGGAGACATCGTCCATGGCATGGCTGAGGGTCCACACTGAGCATCTCATCCGCAGCATGAAGCAACACAAGCTGGACAGTCATCATCTTTTTCTATTACACCAAGCACCAACCAGATTTATACAATGGCCTGCCTTCTGCGCATTAGTAAAAGCTTGAGCTAAATAATAAAGTGTTCACACACTGTACATAATTTATATGTTGTTGTCTGCACTGCAGGAATGTAAAGTTGTctatataataaacattaattttcagCATATTCATTTAAACATATATTACAGAACAATTTGAGTGAACAATTGCTCtaactaatgtaaatataaatcattttagaTACTTGCACTGCAGGTGTAAATAAGCAGGGTATTATGTGCATAGAGAAATATGCAATGCTTACCTCCATCAAATGTACTGCCTCTGTCTTTTGACAAAAATCAGGCAGGCAACTACCGTCAGACCCCAAGTGATGCTCAAGCACTGgttgtatttaattacatttaatcttAGCCTTTTTAAAAAcgaatgtttttaataaaagattacaagaataatgcaaaatgcatttgtttcaagtcacaaaaatgtaatgaatgggataCTAACTCCAACTCATTTTGAACAAGGAAAAcccttaaaatatgtaaatataagtaACTAGACACTTGCACTgcagtataaatatatacagtttgaCACAATTTTAAACATTTCCCTTACAGCGATGTGTTAAAATACAACATTAAACAATTGTTAAATAAGATGTTGTTTGAGTGTTTTGTTCAAATTTGTAATCATTTTGacaggtaaaaataaaaaaagaaagaaatggtcAGCTTCCTCTGAAACATTTTAATGTctttgtagatgagctggatctTCATGTCATCCTGAGAATAAAAAAC
>TCONS_00055934
aagaagaggaagaggaggcgGAGGATGTCCGGTTTCTTCTAGAGTTTCTACTGGAGATCAAACTCTTCAGAtccatcatggaggacacacacacacctagagaGCAGGATTTGTCTACAGGATGCAGttcagttcatcagaagagagcagaagcagagcccagctgtgtgtctatgaagagtgacgcgtCTATGGATCCACCAATGAAATTTAAGAGTGAAAACACAGaacctgctgtcagATGTTAGATGTTGTATCTGAGCTCTGCAGGATAGTGCTTGAAGATCTCCGCTTTACACTTCAGGCCACAATAGATTCTATGCACGAACTCTGCTGACGTATTTCCGGTAGAAAATAAGCCTGTTTCTTTGCTTCCGCATAACGTGTTCTAAAGTGAAATCTTACAGCGGCGAAACCTAAACACGTTCGGAGCATGGCAAACAAGGGAGATTTACACATAAATTAGTGAGGATCCTGTGCCAGTGGTTGCCCAGCATCTGGAACATCATTATTGTTCAGTTCCACAACGAACGGCAGATGATTAATGCACCGGATCAGGCTGACAAGTCTCCGTGAGGAGGTGGAGAGACTGCTTCCCTGCTGCTTTTGGTGTTATACAGCTCTAAAGGTACACAACTTGCATCCTACAACATCCAGAGTAAGCGCAACTGTGAGGGAGACATCGTCCATGGCATGGCTGAGGGTCCACACTGAGCATCTCATCCGCAGCATGAAGCAACACAAGCTGGACAGTCATCATCTTTTTCTATTACACCAAGCACCAACCAGATTTATACAATGGCCTGCCTTCTGCGCATTAGTAAAAGCTTGAGCTAAATAATAAAGTGTTCACACACTGTACATAATTTATATGTTGTTGTCTGCACTGCAGGAATGTAAAGTTGTctatataataaacattaattttcagCATATTCATTTAAACATATATTACAGAACAATTTGAGTGAACAATTGCTCtaactaatgtaaatataaatcattttagaTACTTGCACTGCAGGTGTAAATAAGCAGGGTATTATGTGCATAGAGAAATATGCAATGCTTACCTCCATCAAATGTACTGCCTCTGTCTTTTGACAAAAATCAGGCAGGCAACTACCGTCAGACCCCAAGTGATGCTCAAGCACTGgttgtatttaattacatttaatcttAGCCTTTTTAAAAAcgaatgtttttaataaaagattacaagaataatgcaaaatgcatttgtttcaagtcacaaaaatgtaatgaatgggataCTAACTCCAACTCATTTTGAACAAGGAAAAcccttaaaatatgtaaatataagtaACTAGACACTTGCACTgcagtataaatatatacagtttgaCACAATTTTAAACATTTCCCTTACAGCGATGTGTTAAAATACAACATTAAACAATTGTTAAATAAGATGTTGTTTGAGTGTTTTGTTCAAATTTGTAATCATTTTGacaggtaaaaataaaaaaagaaagaaatggtcAGCTTCCTCTGAAACATTTTAATGTctttgtagatgagctggatctTCATGTCATCCTGAGAATAAAAAAC
>TCONS_00055935
aagaagaggaagaggaggcgGAGGATGTCCGGTTTCTTCTAGAGTTTCTACTGGAGATCAAACTCTTCAGAtccatcatggaggacacacacacacctagagaGCAGGATTTGTCTACAGGATGCAGttcagttcatcagaagagagcagaagcagagcccagctgtgtgtctatgaagagtgacgcgtCTATGGATCCACCAATGAAATTTAAGAGTGAAAACACAGaacctgctgtcaggtagatcatctctttaatatctgcaagtgatgagtattttcataataaatgaatcaggtaATTAGTGTTGTGGATCTGTTGGGTTTCAGATGTTAGATGTTGTATCTGAGCTCTGCAGGATAGTGCTTGAAGATCTCCGCTTTACACTTCAGGCCACAATAGATTCTATGCACGAACTCTGCTGACGTATTTCCGGTAGAAAATAAGCCTG

Function

symbol description
si:dkey-72l17.5 Predicted to be involved in intracellular signal transduction.

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDARG00000104412

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00055932 False 3726 mRNA 0.46 10 31943831 31993240
TCONS_00055933 False 3069 mRNA 0.46 8 31944005 31984150
TCONS_00058249 False 1102 lncRNA 0.35 2 31986302 31992146
TCONS_00055934 False 1578 lncRNA 0.39 5 31986302 31993242
TCONS_00055935 True 452 lncRNA 0.43 3 31991784 31993242

Neighbor

gene id symbol gene type direction distance location
XLOC_028888 si:dkey-265e15.5 coding downstream 148725 31535449 ~ 31795106 (-)
XLOC_028890 NA coding downstream 315731 31626266 ~ 31628100 (-)
XLOC_028889 NA coding downstream 386334 31555894 ~ 31557497 (-)
XLOC_028887 si:dkey-43f9.4 coding downstream 631876 31247968 ~ 31311955 (-)
XLOC_028886 NA coding downstream 697164 31245741 ~ 31246667 (-)
XLOC_028893 BX649328.2 coding upstream 48852 32042094 ~ 32042540 (-)
XLOC_028894 BX649328.3 coding upstream 103569 32096811 ~ 32097405 (-)
XLOC_028895 si:dkey-72l17.6 coding upstream 180895 32174137 ~ 32180155 (-)
XLOC_028896 CR450785.11 coding upstream 198136 32191378 ~ 32192868 (-)
XLOC_028897 CR450785.15 coding upstream 263030 32256272 ~ 32256435 (-)
XLOC_028885 NA non-coding downstream 698232 31241123 ~ 31245599 (-)
XLOC_028884 BX571711.5 non-coding downstream 716204 31227559 ~ 31227627 (-)
XLOC_028898 CR450785.7 non-coding upstream 264340 32257582 ~ 32257730 (-)
XLOC_028901 BX324003.1 non-coding upstream 723612 32716854 ~ 32718201 (-)
XLOC_028902 NA non-coding upstream 764954 32758196 ~ 32897133 (-)

Expression


Co-expression Network