G1000184


Basic Information

Item Value
gene id G1000184
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 59879678 ~ 59930131 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1138146
tcagggtgatgagctgtgttgattttacgccaaacataacgttttgcattgttgccaaaaggttcaattttggtttcatctgaccagagcaccttcttccacatgtttggtgtgtctcccaggtggcttgtggcaaactttaaacgacactttttatggatatctttaagaaatggctttcttcttgccactcttccataaagatttgtgcaatatacgactgattgttgtcctatggacagagtctcccacctcagctgtagatctctgcagtttatccagagtgatcatggtcctcttggctgcatctctgatcagtcttctccttgtatgagctgaaagtttagagggacggccaggtcttggtagatttgcagtggtctgatactcctcccatttcaatattatcgcttg

Function

NR:

description
Tc1-like transporase

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1138146 True 414 lncRNA 0.43 2 59879678 59930131

Neighbor

gene id symbol gene type direction distance location
LOC110536104 LOC106580322 coding upstream 31565 59840378 ~ 59848113 (+)
rhbdd3 rhbdd3 coding upstream 228682 59645825 ~ 59650996 (+)
trnaa-ugc-51 NA coding upstream 363482 59516121 ~ 59516196 (+)
LOC110536090 LOC106580338 coding upstream 486475 59389200 ~ 59393203 (+)
LOC110536086 LOC106580340 coding upstream 508229 59363887 ~ 59371838 (+)
LOC110536106 LOC106580319 coding downstream 45183 59975314 ~ 60109794 (+)
ficd ficd coding downstream 321075 60251206 ~ 60255083 (+)
LOC110535077 si:ch211-191d15.2 coding downstream 349903 60279228 ~ 60283592 (+)
LOC110536118 dao coding downstream 532462 60462593 ~ 60474608 (+)
LOC110536119 usp30 coding downstream 559875 60490006 ~ 60507486 (+)
G1000065 NA non-coding upstream 117593 59761821 ~ 59762085 (+)
G999636 NA non-coding upstream 238745 59640733 ~ 59640933 (+)
G999633 NA non-coding upstream 242215 59637261 ~ 59637463 (+)
G999594 NA non-coding upstream 319781 59559603 ~ 59559897 (+)
G999574 NA non-coding upstream 355293 59524128 ~ 59524385 (+)
G1000187 NA non-coding downstream 4295 59934426 ~ 59934522 (+)
G1000221 NA non-coding downstream 29249 59959380 ~ 59959714 (+)
G1000224 NA non-coding downstream 34956 59965087 ~ 59965302 (+)
G1000225 NA non-coding downstream 35478 59965609 ~ 59965837 (+)
G1000226 NA non-coding downstream 36144 59966275 ~ 59966479 (+)
G998557 LOC106588150 other upstream 1576691 58301585 ~ 58302987 (+)
G997824 NA other upstream 2090507 57787468 ~ 57789171 (+)
LOC110536038 LOC106579834 other upstream 2816098 57044708 ~ 57072429 (+)
LOC110536021 LOC106579845 other upstream 3446407 56386314 ~ 56434657 (+)
LOC110535084 lnpep other downstream 1264960 61180837 ~ 61206347 (+)
LOC110536169 LOC106580482 other downstream 1857132 61787232 ~ 61802788 (+)
G1002117 NA other downstream 2371046 62301177 ~ 62302835 (+)
LOC110536190 LOC103397138 other downstream 2561050 62490915 ~ 62494341 (+)
G1004025 LOC106580455 other downstream 3625834 63555965 ~ 63558816 (+)

Expression


Co-expression Network