G1000221


Basic Information

Item Value
gene id G1000221
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 59959380 ~ 59959714 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1138186
cccttaatgttgatgtggttgttactgacaagaagcacatggctgagctctttaatcaccactttattaagtcaggattcctgtttgactcagccatgcctccttgcctgtccaccatctcctcatctcccaccctttctaatgtgactatccccgATTCTTTTCCcttgccccgctacaaagtttctccctgcaggcagttactgagtccgaggtgctaaaggagctccttaaacttgacccccaaaaaacatctgggtcagatggtttagaccctttcttctttaagattgctgcccctatcatcaccaagcctatcACCAACttgtttaacc

Function

NR:

description
unnamed protein product, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1138186 True 335 lncRNA 0.47 1 59959380 59959714

Neighbor

gene id symbol gene type direction distance location
LOC110536105 LOC106580320 coding upstream 27458 59883529 ~ 59931922 (+)
LOC110536104 LOC106580322 coding upstream 111267 59840378 ~ 59848113 (+)
rhbdd3 rhbdd3 coding upstream 308384 59645825 ~ 59650996 (+)
trnaa-ugc-51 NA coding upstream 443184 59516121 ~ 59516196 (+)
LOC110536090 LOC106580338 coding upstream 566177 59389200 ~ 59393203 (+)
LOC110536106 LOC106580319 coding downstream 15600 59975314 ~ 60109794 (+)
ficd ficd coding downstream 291492 60251206 ~ 60255083 (+)
LOC110535077 si:ch211-191d15.2 coding downstream 320320 60279228 ~ 60283592 (+)
LOC110536118 dao coding downstream 502879 60462593 ~ 60474608 (+)
LOC110536119 usp30 coding downstream 530292 60490006 ~ 60507486 (+)
G1000187 NA non-coding upstream 24858 59934426 ~ 59934522 (+)
G1000184 NA non-coding upstream 29249 59879678 ~ 59930131 (+)
G1000065 NA non-coding upstream 197295 59761821 ~ 59762085 (+)
G999636 NA non-coding upstream 318447 59640733 ~ 59640933 (+)
G999633 NA non-coding upstream 321917 59637261 ~ 59637463 (+)
G1000224 NA non-coding downstream 5373 59965087 ~ 59965302 (+)
G1000225 NA non-coding downstream 5895 59965609 ~ 59965837 (+)
G1000226 NA non-coding downstream 6561 59966275 ~ 59966479 (+)
G1000228 NA non-coding downstream 11369 59971083 ~ 59971400 (+)
G1000238 NA non-coding downstream 33007 59992721 ~ 59993693 (+)
LOC110536086 LOC106580340 other upstream 587542 59363887 ~ 59371838 (+)
G998557 LOC106588150 other upstream 1656393 58301585 ~ 58302987 (+)
G997824 NA other upstream 2170209 57787468 ~ 57789171 (+)
LOC110536038 LOC106579834 other upstream 2895800 57044708 ~ 57072429 (+)
LOC110536021 LOC106579845 other upstream 3526109 56386314 ~ 56434657 (+)
LOC110535084 lnpep other downstream 1235377 61180837 ~ 61206347 (+)
LOC110536169 LOC106580482 other downstream 1827549 61787232 ~ 61802788 (+)
G1002117 NA other downstream 2341463 62301177 ~ 62302835 (+)
LOC110536190 LOC103397138 other downstream 2531467 62490915 ~ 62494341 (+)
G1004025 LOC106580455 other downstream 3596251 63555965 ~ 63558816 (+)

Expression


Co-expression Network