XLOC_028895 (si:dkey-72l17.6)


Basic Information

Item Value
gene id XLOC_028895
gene name si:dkey-72l17.6
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007115.7
NCBI id CM002888.2
chromosome length 78093715
location 32174137 ~ 32180155 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00055938
atggcgtttattaaagaggagagtgaagatgtgaagattgaagaaaaaTTCAGAGTCAAACAgaaagatctgcaggaacaaacagacctgatggtgctgaaagaagagacacaTCAATGGAATGAAATAGAAGAGAAACACCAAGACATAACGACTGAtaaaaaacccacactgactaaaaagacttcatcatgcggaagacctcggaaatccaagtcTAGTTGTAATTTGAGCTGTAAAcagagtagaaagagtttcagtcaaaagccaaaccttgatgttcacactagaaagaaaccttacacctgcaaacagtgtggaaaaagcttctataatacaggaaacttaacagtgcacatgagaattcacactggagagaggccgtacacatgccaacagtgtgggaaaagcttctattctacaggaaacttggcagtgcacatgagaattcataCTGGGGAGAGGCTCtactcttgccctcagtgtggaaagagttgtaAGCAAAATGGCAATCTTGAAgcccacatgagaactcacactggagagagaagctttatttgcacacagtgtgggaaaggtttttctcaaaaacaaaaccttaccatccacatgaggattcacactggagagaaaccttacacatgcacagaCAAACATCAGAAACAGGTGGGTTCAACAAAGGTTTCcatccatgtaaaaaaaaaaataaaaaatgttgcacAACAAATAGTAGTAATAACTATAATATTCAGCCCCAGTAAAAAGTTTGGAATATTTTATaataagcttattctgctcactaaaatgttattgcatttttaa
>TCONS_00055939
gtgacgtcatcaggcagcGCCGCTTCAGCGCTGTAATTCAACTGGagtaaggataaagtgtccaaactcagagaaaaactcctccagaatcgactgatctccacactgttataaagatggcgtttattaaagaggagagtgaagatgtgaagattgaagaaaaaTTCAGAGTCAAACAgaaagatctgcaggaacaaacagacctgatggtgctgaaagaagagacacaTCAATGGAATGAAATAGAAGAGAAACACCAAGACATAACGACTGAtaaaaaacccacactgactaaaaagacttcatcatgcggaagacctcggaaatccaagtcTAGTTGTAATTTGAGCTGTAAAcagagtagaaagagtttcagtcaaaagccaaaccttgatgttcacactagaaagaaaccttacacctgcaaacagtgtggaaaaagcttctataatacaggaaacttaacagtgcacatgagaattcacactggagagaggccgtacacatgccaacagtgtgggaaaagcttctattctacaggaaacttggcagtgcacatgagaattcataCTGGGGAGAGGCTCtactcttgccctcagtgtggaaagagttgtaAGCAAAATGGCAATCTTGAAgcccacatgagaactcacactggagagagaagctttatttgcacacagtgtgggaaaggtttttctcaaaaacaaaaccttaccatccacatgaggattcacactggagagaaaccttacacatgcacagagtgtggtaaaagtttcccacatataggctcactcaaacaccacatgataagtcacaccggggagaagccgtttgcatgtgctcattgtggaaagagcttcacaaccaaagctagcctcatgaatcacatgaatggtcacactggaaccaaagtgtttacatgtgatcattgtggaaagagtctcacatgcaaagactccattaagcaacacatgaagactcacttAGGAGAGCGTTttcgatgcagtgagtgtggaaaggtcttcaaacataaaagaagcctcgtcaatcacatgaagcttcacaatggagagaaaaaatgaGGCCTTGTCAAGCGGAGCTTAAGGTCTCTCACCCGGGATAGCATGGAATAGCATCTCgggacaagtgtgaactcttgaatacatctcaagttactagaatgaaaccctttgaacctgAAGATTTAAACACAATAACTGAAGAGGGGTAAAGATGTACCAGGTTGTGAGAGTTTCTACTTCTTCTTTGCAAGAAAGCGAAATAACTCTATATGTGTTTCCAGTTATTATGAACTGAAAACCAAATTTGTGCACATTGCACACTGCAATCAAATGGTTGGCACTGCAAagagaattagaaagattagggaggagaaaatGTTTGGGGAGATGCAGGGTAAACTCTCCTACACtcttagattgtgtttttgattattcACATTGTTTGATTTTCACTCCCTCGAACAAACACCGATTTGCCTCCAATTTTGGCATTTTGTCTGCAGTGTCACAAAACTTGGTGGTGAATAAAAATCCACCTAAACTCGGCCGGTGTGAACTTGCAATGACAGTgagagactgatgcagactcCCTAAAGCCTTGatcagactacacaatgccatttgccTTTAACAacagatcagatttgtgtcagattatgagattttgacttgagcaaatcttgatgtgttgtggctaacaaatgaagactttggtttcaaaacactacacatttattttgatggactgattttagaaaataaaaaagttttcctcatgaagacaattaaactttctgtAAACAACTGGTTTCCTTTGAAGaaatgttcatgtgaaaactcccacattactacaaataaatctgtgtatgggaaa
>TCONS_00055940
atggcgtttattaaagaggagagtgaagatgtgaagattgaagaaaaaTTCAGAGTCAAACAgaaagatctgcaggaacaaacagacctgatggtgctgaaagaagagacacaTCAATGGAATGAAATAGAAGAGAAACACCAAGACATAACGACTGAtaaaaaacccacactgactaaaaagacttcatcatgcggaagacctcggaaatccaagtcTAGTTGTAATTTGAGCTGTAAAcagagtagaaagagtttcagtcaaaagccaaaccttgatgttcacactagaaagaaaccttacacctgcaaacagtgtggaaaaagcttctataatacaggaaacttaacagtgcacatgagaattcacactggagagaggccgtacacatgccaacagtgtgggaaaagcttctattctacaggaaacttggcagtgcacatgagaattcataCTGGGGAGAGGCTCtactcttgccctcagtgtggaaagagttgtaAGCAAAATGGCAATCTTGAAgcccacatgagaactcacactggagagagaagctttatttgcacacagtgtgggaaaggtttttctcaaaaacaaaaccttaccatccacatgaggattcacactggagagaaaccttacacatgcacagagtgtggtaaaagtttcccacatataggctcactcaaacaccacatgataagtcacaccggggagaagccgtttgcatgtgctcattgtggaaagagcttcacaaccaaagctagcctcatgaatcacatgaatggtcacactggaaccaaagtgtttacatgtgatcattgtggaaagagtctcacatgcaaagactccattaagcaacacatgaagactcacttAGGAGAGCGTTttcgatgcagtgagtgtggaaaggtcttcaaacataaaagaagcctcgtcaatcacatgaaCTTAAGGTCTCTCACCCGGGATAGCATGGAATAG

Function

symbol description
si:dkey-72l17.6 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II transcription regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to be active in nucleus.

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDARG00000102008

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00055938 False 822 mRNA 0.38 3 32174137 32179699
TCONS_00055939 False 1902 mRNA 0.40 3 32175332 32180155
TCONS_00055940 True 981 mRNA 0.42 3 32176095 32179699

Neighbor

gene id symbol gene type direction distance location
XLOC_028894 BX649328.3 coding downstream 76732 32096811 ~ 32097405 (-)
XLOC_028893 BX649328.2 coding downstream 131597 32042094 ~ 32042540 (-)
XLOC_028891 si:dkey-72l17.5 coding downstream 180895 31943831 ~ 31993242 (-)
XLOC_028892 NA coding downstream 214029 31957130 ~ 31960108 (-)
XLOC_028890 NA coding downstream 546037 31626266 ~ 31628100 (-)
XLOC_028896 CR450785.11 coding upstream 11223 32191378 ~ 32192868 (-)
XLOC_028897 CR450785.15 coding upstream 76117 32256272 ~ 32256435 (-)
XLOC_028898 CR450785.7 coding upstream 77427 32257582 ~ 32257730 (-)
XLOC_028899 si:dkey-16p6.1 coding upstream 249424 32429579 ~ 32646394 (-)
XLOC_028900 znf1085 coding upstream 287699 32467854 ~ 32471499 (-)
XLOC_028889 NA non-coding downstream 616640 31555894 ~ 31557497 (-)
XLOC_028886 NA non-coding downstream 927470 31245741 ~ 31246667 (-)
XLOC_028901 BX324003.1 non-coding upstream 536699 32716854 ~ 32718201 (-)
XLOC_028902 NA non-coding upstream 578041 32758196 ~ 32897133 (-)
XLOC_028905 NA non-coding upstream 947860 33128015 ~ 33135638 (-)

Expression


Co-expression Network