G1000344


Basic Information

Item Value
gene id G1000344
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 60213022 ~ 60222264 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1138313
gcgatcagttgaagagcatgcatttagttttacttgtatttaagagcagttggaggccaccgaaggagagttgtatggcattgaagctcgtctggagggttgttaacacagtgtccaaggaagggccagaagtatacagaatggtgtcgtctgcgtagaggtggatcagagaatcaccagcagcaagagcaacatcattgatgtatacagaaaagagagtcggcccgagaattgaaccctgtggcacacccatagagactgtcagaggtccggacaacagtccctccgatttgacacactgaactctatcagagaagtagttggtaaaccaggcgaggcaatcatttgagaaaccaaggctgtcgagtctgccaataagaatgttgtgattgacagagtcgaaagccttggccaggtcgatgaatacggctgcacagtaatgtctcttatcgatggcggttatggtgtcgtttagaaccttgagcgtggctgaggtgcacccatgaccagctctgaaaccagattgcatagtggagaaggtatggtgggattcgaaatggtcagtaatctgtttgttaacttggctttcaaagaccttggaaagacagggtaggatagatataggtctgtagcagtttgggtctagagtgtcaccccctttgaagagggggatgaccacggcagctttccaatctttgagaatctcagacgatacgaagagaggttgaacaggttagtg

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1138313 True 739 lncRNA 0.47 2 60213022 60222264

Neighbor

gene id symbol gene type direction distance location
LOC110536106 LOC106580319 coding upstream 103228 59975314 ~ 60109794 (+)
LOC110536105 LOC106580320 coding upstream 281100 59883529 ~ 59931922 (+)
LOC110536104 LOC106580322 coding upstream 364909 59840378 ~ 59848113 (+)
rhbdd3 rhbdd3 coding upstream 562026 59645825 ~ 59650996 (+)
trnaa-ugc-51 NA coding upstream 696826 59516121 ~ 59516196 (+)
ficd ficd coding downstream 28942 60251206 ~ 60255083 (+)
LOC110535077 si:ch211-191d15.2 coding downstream 57770 60279228 ~ 60283592 (+)
LOC110536118 dao coding downstream 240329 60462593 ~ 60474608 (+)
LOC110536119 usp30 coding downstream 267742 60490006 ~ 60507486 (+)
LOC110536120 ung coding downstream 287509 60509773 ~ 60518067 (+)
G1000339 NA non-coding upstream 5082 60207735 ~ 60207940 (+)
G1000330 NA non-coding upstream 17049 60195724 ~ 60195973 (+)
G1000326 NA non-coding upstream 22607 60190166 ~ 60190415 (+)
G1000294 NA non-coding upstream 79271 60133452 ~ 60133751 (+)
G1000290 LOC106583873 non-coding upstream 88077 60124640 ~ 60124945 (+)
G1000383 NA non-coding downstream 63342 60285606 ~ 60285831 (+)
G1000392 NA non-coding downstream 85498 60307762 ~ 60308016 (+)
G1000367 NA non-coding downstream 86389 60308653 ~ 60311729 (+)
G1000434 NA non-coding downstream 141924 60364188 ~ 60364475 (+)
LOC110536086 LOC106580340 other upstream 841184 59363887 ~ 59371838 (+)
G998557 LOC106588150 other upstream 1910035 58301585 ~ 58302987 (+)
G997824 NA other upstream 2423851 57787468 ~ 57789171 (+)
LOC110536038 LOC106579834 other upstream 3149442 57044708 ~ 57072429 (+)
LOC110536021 LOC106579845 other upstream 3779751 56386314 ~ 56434657 (+)
LOC110535084 lnpep other downstream 972827 61180837 ~ 61206347 (+)
LOC110536169 LOC106580482 other downstream 1564999 61787232 ~ 61802788 (+)
G1002117 NA other downstream 2078913 62301177 ~ 62302835 (+)
LOC110536190 LOC103397138 other downstream 2268917 62490915 ~ 62494341 (+)
G1004025 LOC106580455 other downstream 3333701 63555965 ~ 63558816 (+)

Expression


Co-expression Network