XLOC_028900 (znf1085)


Basic Information

Item Value
gene id XLOC_028900
gene name znf1085
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007115.7
NCBI id CM002888.2
chromosome length 78093715
location 32467854 ~ 32471499 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00055955
ACTTTACACatataaaccgattgattaaagtttcagaataaagtgtccaaacacagagaaaaactcctgctgaagcgactgatctccacactgttataaagatggcgtttattaaagaggagagtgaagatgtgaagattgaagaaacattcacagtcaaacaggaagatctgcaggaacaaacagacctaattgaagagaatgaggggagaaaagaggaggaacatcatgtcaaaattgaggaaaaaactcatttacagactgatggtattttgaaaaggggagacaaaaatagtttcacctgcactcagtgtggaaagagttttggaagtaAAGgctatcttaagattcacatgaggatccacactggagagaaactattcacatgccctcagtgtgggaagagttttggaagaaaaaggGAACTTAAGATTCACaggaggatccacactggagaaaaaccatacacatgcactcggtgtgggaagagttttagccaatcatcaaacttaaatcaacacatgaggatccacactggagagaaaccattcacgtgcactcagtgtggaaagagttttaaccgatcatcatcccttaatgaacacatgatgattcataccggagagaaaccattcacatgcactcagtgtgggaagagttttggaagaaatttcgatcttaagattcacatgatgattcacactggagagaacccATTCAGATGCACgcattgtgggaagagttttagccaatcatcataccttaatcaacacatgaggatccacactagagagaacctattcacatgcactcagtgtgggaagagtttccaccgatcatcatcccttaataatcACAAGacgatccacactagagagaaacccttTACTTGCACCCAGTGTGGAAAAACCTTTAACAACTCATCACACCTTTATGAACACAtgcggatccacactggagagaaaccatttacatgcactcagtgtgggaagagtttcagcctatcatcaaaccttaatcgacacatgaggatccacactagagagaacccattcacatgcactcagtgtgggaagagtttcatctgctcatcatcccttaatctacacattatgagccacactggagagaaacttgCACTTAAGCAGCGGTCACAATGGACTTTTTCCCCCATggatttccattcatacgcacgggaatgtgtcagaccggaaaccaAGTTTGtgtgtcaagtttcgcagttcactgcattgcaaagttcaagcttggtgaactctgacctgcaaaatcgcatcacttgactgtgtgagaccaatcaaagatcaaaacatgacctttctggacagaaatgtaaaatatggaccaatagcttgcttttttgtctaataatcttgtttaatcccgccgcTTTTCACAGCGCcaaacaacagaattttgcatgctcaaactctagtgtgaccgcagctgcggtgtgggatgagtttcagcaactcctcagaccttaataaagacccacactggagataaACCATTAAATGCACTCCGTGTGGGAAGTTTCAACCGAttagcaaaccttaatgaacacataaagatccacactggtgtgaaagagtatatgtgcttgagtgtgagaagacttttatttcaaaatttaaacTGCACCCGAcgtttcacactggagagaccgtacaagtgttcacactgtgacaagaggtttaatcagtgaacacatctgaaaacacaaaagaggattcacactggagagaaaccgtacagatctgatgAGTGTCTACAGAATTGGacaaaagttgcacacatgacatgaatgcagcaaaacattttctctgtgcacaatgtttgaaaaggctgagtgacgatatactgttttccaacactcctacattgcagtaggtggggttgtaaatgtgttgcgctccTCGCGTTTACCGTAAACACAATGCTCGCgactgagagaagaacagtttcataaacatctgacaAACAGCATCTCAGCAGCTTAAAATctctctttgcaagtgattgtacaggtgcggatacatctgtactccactctccagtgttttcatgta
>TCONS_00055956
GTGTGACGTCATTAGGCTGCGCCGCTTCCGCGCTGCAGTTCAACTGGAGGAAGaataaagtgtccaaacacagagaaaaactcctgctgaagcgactgatctccacactgttataaagatggcgtttattaaagaggagagtgaagatgtgaagattgaagaaacattcacagtcaaacaggaagatctgcaggaacaaacagacctaattgaagagaatgaggggagaaaagaggaggaacatcatgtcaaaattgaggaaaaaactcatttacagactgatggtattttgaaaaggggagacaaaaatagtttcacctgcactcagtgtggaaagagttttggaagtaAAGgctatcttaagattcacatgaggatccacactggagagaaactattcacatgccctcagtgtgggaagagttttggaagaaaaaggGAACTTAAGATTCACaggaggatccacactggagaaaaaccatacacatgcactcggtgtgggaagagttttagccaatcatcaaacttaaatcaacacatgaggatccacactggagagaaaccattcacgtgcactcagtgtggaaagagttttaaccgatcatcatcccttaatgaacacatgatgattcataccggagagaaaccattcacatgcactcagtgtgggaagagttttggaagaaatttcgatcttaagattcacatgatgattcacactggagagaacccATTCAGATGCACgcattgtgggaagagttttagccaatcatcataccttaatcaacacatgaggatccacactagagagaacctattcacatgcactcagtgtgggaagagtttccaccgatcatcatcccttaataatcACAAGacgatccacactagagagaaacccTTGCACCCAGTGTGGAAAAACCTTTAACAACTCATCACACCTTTATGAACACatgaggatccacactagagagaacccattcacatgcactcagtgtgggaagagtttcatctgctcatcatcccttaatctacacattatgagccacactggagagaaacttgCACTTAAGCAGCGGTCACAATGGACTTTTTCCCCCATggatttccattcatacgcacgggaatgtgtcagaccggaaaccaAGTTTGtgtgtcaagtttcgcagttcactgcattgcaaagttcaagcttggtgaactctgacctgcaaaatcgcatcacttgactg

Function

symbol description
znf1085 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription, DNA-templated.

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0046872 metal ion binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0000978 RNA polymerase II cis-regulatory region sequence-specific DNA binding molecular_function
GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specific molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-080218-7 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription, DNA-templated.

Ensembl:

ensembl_id ENSDARG00000073915

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00055955 False 2090 mRNA 0.42 3 32467854 32471434
TCONS_00055956 True 1232 mRNA 0.43 5 32468640 32471499

Neighbor

gene id symbol gene type direction distance location
XLOC_028898 CR450785.7 coding downstream 210124 32257582 ~ 32257730 (-)
XLOC_028897 CR450785.15 coding downstream 211419 32256272 ~ 32256435 (-)
XLOC_028896 CR450785.11 coding downstream 274986 32191378 ~ 32192868 (-)
XLOC_028895 si:dkey-72l17.6 coding downstream 287699 32174137 ~ 32180155 (-)
XLOC_028894 BX649328.3 coding downstream 370449 32096811 ~ 32097405 (-)
XLOC_028901 BX324003.1 coding upstream 245355 32716854 ~ 32718201 (-)
XLOC_028902 NA coding upstream 286697 32758196 ~ 32897133 (-)
XLOC_028903 BX324003.2 coding upstream 353351 32824850 ~ 32888436 (-)
XLOC_028904 si:dkeyp-4f2.1 coding upstream 586345 33057844 ~ 33073382 (-)
XLOC_028905 NA coding upstream 656516 33128015 ~ 33135638 (-)
XLOC_028893 BX649328.2 non-coding downstream 425314 32042094 ~ 32042540 (-)
XLOC_028892 NA non-coding downstream 507746 31957130 ~ 31960108 (-)
XLOC_028890 NA non-coding downstream 839754 31626266 ~ 31628100 (-)
XLOC_028909 CT027578.1 non-coding upstream 918723 33390222 ~ 33390384 (-)
XLOC_028910 CT027578.2 non-coding upstream 920276 33391775 ~ 33391921 (-)

Expression


Co-expression Network