XLOC_028902


Basic Information

Item Value
gene id XLOC_028902
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007115.7
NCBI id CM002888.2
chromosome length 78093715
location 32758196 ~ 32897133 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00058252
cgggcagaagactttattgaagagaATTAATTGTGCAGTTcatcagcagtgatgttaacttGTCTGTCTTTAAGTAACTTAAACCAAAATACAGTCTGTGAGACACTAATTTATAACAAAGGATGAAACCCCCCTGGAGATTACCCAACTGCTTTGGTTGGGTCACATCTCTTGAGTTCCTGTTGGTCATTTGGTTCACATCTTATCAGAAGTAGATACTTGTCGCATATGAAACAAGCCAATACAATCTATCAACATGCAGAGTTATTTTGTCTTCTTGCAGCCCGATAGCAACTCTCACAACCTGGTACTGGgctgtgacccctgatctacatgACAAAACAGCTGGCAAAGTCTTTACCCCTCTTCAGTTGAGTTTAAATTTTCAggtgttcaaagggtttcattatcagtaacttgatatgtattcaagagttcacacttgtttggcatgctatcccgggagagacctaagctcataagatcctcgagccctgggctccatCCCGTAAgcaggacgagaggggagtttaagctcaggtagatctcgatgaactccccaGACTTCTTTCTAttctaatgacagatatagggTCGGCTAAAGGGAAATATAAGGCTTACTAAGAGCtcgactatggtgccaatttaatgttcagtttacttaggttgtgtgtttttggactgtgggagaaaaccaggggaaatccacgcgagcacagggagaatgagcaaactctgcacaaaaagtCAACTGGTTAGCAGGGACTTTAACCTGCgacattcttactgtgaggcaacagtgctaaccactggctaATCATTGGCTGCCGTGTTGCCCAATCTAGAAAGGAGGGGGAGTAAGGGTGGGAGAGGGATTCTGCAAGACAAGGATAACTGAgttaagctacggtcacactgggcttttcctcccatagacttccattcatacgcacgcgaatgcgtcagactagaaacagggtcatgcgtcaagtttcgccgGTTGCTGAGGTGCAAAGTTcatgcttggtgaactctgacctgcgaaatcgcatcacttgactgcgtgagaccaatcgaggatcaaaacatgacctctctggacagaagttTAAACCATGGAGCAATTTCTcacttttttaatttctaaaaatcttgtttgatcccgccccttttaacagcaccgtacgacagaatttcacaatcTCAAACTCTATTGTGACTGCAGCTTTGTGTTCTGGTTATCTATAGTGagtcaggaatcatctgattggtgaatcatgttttagctaatgctggaccagccgtggacaatcataagcatgtgatcctctcgaaagtagtttataaataaacttcacttgaatgaacagccaaactaTGTGAAAAAGCAGCCGTTTTGAATATACCCGTGTTTGTTTGGACAAGGCCTCAATGTTGAGGACTCTGCTctgcattgtgaagcttcatgtgagtgttgaggcttcttttacttttaaagccctttccacactcactgcatctaaaacgatCCTCTCTTGAGTGAATCTTCATATGTTTCTTTATGGTGTCTTTCCGtttgagactctttccacactgatcacatgtgaacactagggttccagtgtgaccattcatgtggttcttgaggctagttttggttgtgaagctctttccacactgagcacatgtaaACGGCTTCTCTCTGGTGTGAGTTATCATGTGGTGTTTAAGTGAGCTTATATgtgggaaacttttaccacactctgtgcatgtgtaaggtttctctccagtgtgaatcctcatgtggatgtcaAGGTCTTGTTtgtgaccaaaactctttccacactgttcgcaggtgtaaggtttctcccttgtgtgaactctcatgtgaacatcaaggtttggcttttgacagaaactctttccacactgcttacagctgaaaggcttctctccagtgtgaattctcatgtgggttttaaagctttgtttttgactaaaactctttccacactgttcgcaggtgtaaggttgctccctagtgtgaactctcatgtgaacatcaaggtttgacttttgactgaaactctttccacactgtttacagctgaaaggcttctccccagtgtgaattctcatgtgtgctgcaaagtttccagcttgataaaagctttttccacactcttGGCATGTGAACTTTccctctccagtgtgaattctcatgtgggctttAAAGCTTTGtatttgaccaaaactctttccacactgttcgcaggtgtatggttgctccctagtgtgaactctcatgtgaacatcaaggtttgacttctggctgaaactctttctacactgtttacagctgaaattacacccagatttggatttccgaggtcttccgtgtgatgaagtctttttagtcagtgtgggtttttcatcagtcgttatTTCTTGGGGTTTCATAAACTGCTGTTTCTCATCTATTTCATTCTGTccatgagtctcttctttcagcaccatcagatctaaaaaaaaaaaaaaa

Function

GO:

id name namespace
GO:0072175 epithelial tube formation biological_process
GO:0035148 tube formation biological_process

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00058252 True 2539 lncRNA 0.43 2 32758196 32897133

Neighbor

gene id symbol gene type direction distance location
XLOC_028901 BX324003.1 coding downstream 39995 32716854 ~ 32718201 (-)
XLOC_028899 si:dkey-16p6.1 coding downstream 111802 32429579 ~ 32646394 (-)
XLOC_028900 znf1085 coding downstream 286697 32467854 ~ 32471499 (-)
XLOC_028898 CR450785.7 coding downstream 500466 32257582 ~ 32257730 (-)
XLOC_028897 CR450785.15 coding downstream 501761 32256272 ~ 32256435 (-)
XLOC_028904 si:dkeyp-4f2.1 coding upstream 160711 33057844 ~ 33073382 (-)
XLOC_028905 NA coding upstream 230882 33128015 ~ 33135638 (-)
XLOC_028906 si:ch211-162i8.4 coding upstream 282221 33179354 ~ 33189070 (-)
XLOC_028907 znf1000 coding upstream 413627 33310760 ~ 33331681 (-)
XLOC_028908 si:dkeyp-4f2.3 coding upstream 467333 33364466 ~ 33371634 (-)
XLOC_028893 BX649328.2 non-coding downstream 715656 32042094 ~ 32042540 (-)
XLOC_028892 NA non-coding downstream 798088 31957130 ~ 31960108 (-)
XLOC_028909 CT027578.1 non-coding upstream 493089 33390222 ~ 33390384 (-)
XLOC_028910 CT027578.2 non-coding upstream 494642 33391775 ~ 33391921 (-)
XLOC_028912 NA non-coding upstream 520415 33417548 ~ 33446814 (-)
XLOC_028914 NA non-coding upstream 801593 33698726 ~ 33699784 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) G507502 NA non-coding CI01000350 null 1022072 ~ 1024053 (-)