XLOC_028904 (si:dkeyp-4f2.1)


Basic Information

Item Value
gene id XLOC_028904
gene name si:dkeyp-4f2.1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007115.7
NCBI id CM002888.2
chromosome length 78093715
location 33057844 ~ 33073382 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00055960
tgattgtttcctgaaagctgtgctaatgtctgcattggtgttttagctacagtatggcagaggagcgagtaaaggactctctctcagagaaacacagtgtgagatcaggatcatgtgtgtccagctctgtgtctctgaagagtgaccacTCAAAAGATGGTCGTCCTCCAAActtcagagagaaaacaccatcatcagtcaaaagtgtgagatcaggatcatgtgtgtccagctctgtgtctctgaagagtgactggtcaATGGGTCATCCACCACCAGacctcagagagaaaacaccattATCTGCCCAAAgACACCTAGTGGcagatttagtttcttattcagacaatctccagtggatcttccagaatcttgagagcaaaatgatcagatttctgaagaatcaactGGAAAACTTCAGGAAAATCTTACAACACAAAAACAGAGAAGAGTTTGTAAAGGAGTTTAATGAGAACAAAAGCGgaatcacagaagcagctcttgatctcacactcttcttcctgagagagatgaagcaagatcaagctgctgatactcttGATGatgagctgctctacattaatcagcttaaatgtagcctgaagaagaaatatcaaagtgtgtttgaaggaattgctcagcaaggagactccacacttctgaataacatctacacagatctctatatcactcagggtgcgagtgaacaggtcaacactgaacatgagatcagacagattgaagctgcttccagacgtcatcagtcactagagatacaggttgaatgcaaacatttgtttgaagcagctgaacaagacgagcagatcagaactgtcctgacaaaaggagttgctggcatcgggaaatcagtctctgtgcaaaagtttgttctggattgggctgaagggaaagaaaatcaagacatcagcttcatatttcctcttccattcagagagatgaacttaaaggagaaagaaagacaaagtttaaaagacctcataactcagtttttcccagagactaaaggactgaaccttacaagaagcacacaattcaaagtcctgttcatccttgatggattggatgaatgtcgtcttcctctgaactttgctggtagtgagacgtgtcgtgatgtatcttcagcagtctctctggatgttctcctgacgaacctcatcaagggaaatctgcttccttctgctctcatctggatcaccagcagaccagcagctgccagtaagattcctgctgactgtatcgaccggctgacagagatacgaggatttaatgatgcccaaaaggaggagtacttcagaaagagactcacagatcagaatcaggccagagaaatcattgatcacattaaacagtcaaagagtctctttattatgtgccacatcccagtcttctgctggatttcagccactgttctccagaacatactgaaactgaaacacagggctcatgctgaaacactgcaggactctcccaagactctgacacagatgtacacacactttctccgctttcagatccagcagagcagaataaagtatgatggagaaaacacagcagatgtctcctgggatccaaaccTCATCCTTGCACTGGGGAAACTGaccttccagcagctggaaagaaacaatgtgatcttctatgagagcgatctgaaagactgtggcattgatgTCGATAAagcatcggtgtactcaggcatgtgtacccagatctttaagaaGGAGACAGGATTTGTTCTTcataccatgtactgctttcttcacttgagcattcaggagttcattgcagccctttatcaacataTGTTTCTCGACAATGACAAGACACAAGCAGAAAACAGCAGAGATGAGTCCATGATTGATTTCCTGAAGACAGCAGTagacaaggctctggaaagtgagaatggacatctggacctttaccttcgcttccttctcggtctgtcactccagtccaatcgacaactcttacgaggcctcttgacacagcaggatgacagtgaccagagcaaagaggaaataattgcctacatcaagcagaaacttaaAGGGAAcctgtctccagagagatccatcaatctgttctactgtctgaatgaactgaacgaccaaactctgctgaaagagattcagtctcacctcagtagtggaagtctgtcatctgctgacctttcacctgcccagtggtctgctctggtctttgtgttgttgacctcagaggaggagctggaggagtttgagcttcagaaattccagagatcagacgagtgtctcatcagactatcagcagtcatcaaaacctccaaaagagctctgctacagagctgtaatctcactgttcagtcctgtgagagtttgtcttcagctctacaatcctcaaactgtgtgctgagagagctggacctgagtaacaatgacctgcaggattcaggagtgaagaagctctctgatggactaaAGAGTCAACTTTGTAatctggagacactgagactggtcatgtgtaatctcactgttcagtgctgtgagagtttgtcttcagctctacaatcctcaaactgtgtgctgagagagctggacctgagtaacaatgacctgcaggattcaggagtgaagaagctctctgatggactgaagactgtgaactgtaaactggagacactgagattgtctggctgtatggtgacagaggaaggctgtggttttctgtcttcagctctgacttcaaacccctcacacctgagagagctggatctgagctacaatcatccaggagattcaggagtcaagctgctctctgaacaactggaggatccaaactacacactggacaaactcaatctggatcatggaggagagacgaggattacagcaggaccacgcaaatatgtctgtttcctcactctggatccaaacacagcacacactcaactcattctgtctgaggagaacagagaggtgaatcTCCCAGTGAAGCcactcagcaggagaataggagtgtttgtggatcacagtgcaggaactctgatcttctacaacatctatagagacacaatgagcctcatccactcagtccagaccacattcactgagccgctctgccctgggtttggGTTTGGGTTATATGTTTATTTTGGATCATCAGTGAatctgagc
>TCONS_00055961
tgtgagatcaggatcatgtgtgtccagctctgtgtctctgaagagtgactggtcaATGGGTCATCCACCACCAGacctcagagagaaaacaccattATCTGCCCAAAggtatattgtgttttacattattgatcACACATGGATTGTTTCAGGCATATTATTGTGAACCAACAATTCAGTAAAgagaatcatttctgaatgaatcgGTAGTGTGAATGAATCAAATGACTCAATGACTTTGACTCATTTACAGACACCTAGTGGcagatttagtttcttattcagacaatctccagtggatcttccagaatcttgagagcaaaatgatcagatttctgaagaatcaactGGAAAACTTCAGGAAAATCTTACAACACAAAAACAGAGAAGAGTTTGTAAAGGAGTTTAATGAGAACAAAAGCGgaatcacagaagcagctcttgatctcacactcttcttcctgagagagatgaagcaagatcaagctgctgatactcttGATGGTAAGACCTCTGTCAAGAATCTGTCAGACTGTCACTTACAAATAAGTCAagactaaatctctctgtttctttgctcctgtgtttagatgagctgctctacattaatcagcttaaatgtagcctgaagaagaaatatcaaagtgtgtttgaaggaattgctcagcaaggagactccacacttctgaataacatctacacagatctctatatcactcagggtgcgagtgaacaggtcaacactgaacatgagatcagacagattgaagctgcttccagacgtcatcagtcactagagatacaggttgaatgcaaacatttgtttgaagcagctgaacaagacgagcagatcagaactgtcctgacaaaaggagttgctggcatcgggaaatcagtctctgtgcaaaagtttgttctggattgggctgaagggaaagaaaatcaagacatcagcttcatatttcctcttccattcagagagatgaacttaaaggagaaagaaagacaaagtttaaaagacctcataactcagtttttcccagagactaaaggactgaaccttacaagaagcacacaattcaaagtcctgttcatccttgatggattggatgaatgtcgtcttcctctgaactttgctggtagtgagacgtgtcgtgatgtatcttcagcagtctctctggatgttctcctgacgaacctcatcaagggaaatctgcttccttctgctctcatctggatcaccagcagaccagcagctgccagtaagattcctgctgactgtatcgaccggctgacagagatacgaggatttaatgatgcccaaaaggaggagtacttcagaaagagactcacagatcagaatcaggccagagaaatcattgatcacattaaacagtcaaagagtctctttattatgtgccacatcccagtcttctgctggatttcagccactgttctccagaacatactgaaactgaaacacagggctcatgctgaaacactgcaggactctcccaagactctgacacagatgtacacacactttctccgctttcagatccagcagagcagaataaagtatgatggagaaaacacagcagatgtctcctgggatccaaaccTCATCCTTGCACTGGGGAAACTGaccttccagcagctggaaagaaacaatgtgatcttctatgagagcgatctgaaagactgtggcattgatgTCGATAAagcatcggtgtactcaggcatgtgtacccagatctttaagaaGGAGACAGGATTTGTTCTTcataccatgtactgctttcttcacttgagcattcaggagttcattgcagccctttatcaacataTGTTTCTCGACAATGACAAGACACAAGCAGAAAACAGCAGAGATGAGTCCATGATTGATTTCCTGAAGACAGCAGTagacaaggctctggaaagtgagaatggacatctggacctttaccttcgcttccttctcggtctgtcactccagtccaatcgacaactcttacgaggcctcttgacacagcaggatgacagtgaccagagcaaagaggaaataattgcctacatcaagcagaaacttaaAGGGAAcctgtctccagagagatccatcaatctgttctactgtctgaatgaactgaacgaccaaactctgctgaaagagattcagtctcacctcagtagtggaagtctgtcatctgctgacctttcacctgcccagtggtctgctctggtctttgtgttgttgacctcagaggaggagctggaggagtttgagcttcagaaattccagagatcagacgagtgtctcatcagactatcagcagtcatcaaaacctccaaaagagctctgctacagagctgtaatctcactgttcagtcctgtgagagtttgtcttcagctctacaatcctcaaactgtgtgctgagagagctggacctgagtaacaatgacctgcaggattcaggagtgaagaagctctctgatggactaaAGAGTCAACTTTGTAatctggagacactgaggtctgagtttaagcatctgattgattgattgattgattgattgattgattgattgattgattgattgattttttgttttgttacatcagacAGATCACATTAACGCTGTGTTTTCAGTAATGTGTGCTCTTTCTCAGATTGATGACATGTAAACTCACAGCCGattcttgtgagagtttgtcttcagctctacaatcctcaaactgtgtgctgagagaacTGGACCTGAGTATTAATCATCTGCCAAATTCAGGAGTAAaacttctctctgatggactgaagactgtgaactgtaaactggagacactgaggtctgagtttaaacacctgcttgcttgatcgattgattgattgactgattgttttttttttttgtttcgtttcATCAGACaaatcacattaacagtgtggtttttagtaatgtgtgttcttctttctcagactggtcatgtgtaatctcactgttcagtgctgtgagagtttgtcttcagctctacaatcctcaaactgtgtgctgagagagctggacctgagtaacaatgacctgcaggattcaggagtgaagaagctctctgatggactgaagactgtgaactgtaaactggagacactgaggtaaatgattctccactttacaataactacagtcagacagtttcatattagagctcttcatgctcgaacatgttaaccctggg

Function

symbol description
si:dkeyp-4f2.1 Predicted to be involved in intracellular signal transduction.

GO:

id name namespace
GO:0035556 intracellular signal transduction biological_process
GO:0005524 ATP binding molecular_function
GO:0000166 nucleotide binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-081103-33 Predicted to be involved in intracellular signal transduction.

Ensembl:

ensembl_id ENSDARG00000089304

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00055960 False 3170 mRNA 0.45 11 33057844 33073382
TCONS_00055961 True 3230 mRNA 0.42 3 33064688 33071267

Neighbor

gene id symbol gene type direction distance location
XLOC_028902 NA coding downstream 160711 32758196 ~ 32897133 (-)
XLOC_028903 BX324003.2 coding downstream 169408 32824850 ~ 32888436 (-)
XLOC_028901 BX324003.1 coding downstream 339643 32716854 ~ 32718201 (-)
XLOC_028899 si:dkey-16p6.1 coding downstream 411450 32429579 ~ 32646394 (-)
XLOC_028900 znf1085 coding downstream 586345 32467854 ~ 32471499 (-)
XLOC_028905 NA coding upstream 54633 33128015 ~ 33135638 (-)
XLOC_028906 si:ch211-162i8.4 coding upstream 105972 33179354 ~ 33189070 (-)
XLOC_028907 znf1000 coding upstream 237378 33310760 ~ 33331681 (-)
XLOC_028908 si:dkeyp-4f2.3 coding upstream 291084 33364466 ~ 33371634 (-)
XLOC_028909 CT027578.1 coding upstream 316840 33390222 ~ 33390384 (-)
XLOC_028898 CR450785.7 non-coding downstream 800114 32257582 ~ 32257730 (-)
XLOC_028897 CR450785.15 non-coding downstream 801409 32256272 ~ 32256435 (-)
XLOC_028893 BX649328.2 non-coding downstream 1015304 32042094 ~ 32042540 (-)
XLOC_028910 CT027578.2 non-coding upstream 318393 33391775 ~ 33391921 (-)
XLOC_028912 NA non-coding upstream 344166 33417548 ~ 33446814 (-)
XLOC_028914 NA non-coding upstream 625344 33698726 ~ 33699784 (-)

Expression


Co-expression Network