XLOC_028906 (si:ch211-162i8.4)


Basic Information

Item Value
gene id XLOC_028906
gene name si:ch211-162i8.4
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007115.7
NCBI id CM002888.2
chromosome length 78093715
location 33179354 ~ 33189070 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00055962
atgtgtgggaagagtttcagccactcatcatctcttaatcaacacatgagaatccacactggagagaaaccattcacatgcactcagtgtgggaagagttttagcaaatcatcatcgctttatagacacatgaagatccacaccggaggaaaacctttcacatgcactcagtgtgggaagagtttcaaccactcATCattccttaatctacacatgaggatccacactggagagaaaccattaacatgccctcagtgtgggaagagttttagcaaatcatcgtcgctttataaacacatgaagatccacaccggagaaaaaccattcacatgcactcagtgtgggaagagtttctacGATTCATCATACCTCaaaaaacacatgaggatccacactggagagaaaccattcacatgcgctcagtgtgggaagagttttaactgctcatcacaccttaaaaagcacatgatgatccacactggagaaaaaccattcacatgcactcagtgtgggaagagtttcagcaaatcttCATCGCTTTATAGACATATGAGGATCCATaccggagaaaaaccattcacttgcactcagtgtgggaagagtttcagccactcatcatcccttaatctacacatgaggatccacactggagagaaaccattcacatgccctcagtgtgggaagaTGTGTTCTAGGGTTTGttaccgaaacccggtgccattatag
>TCONS_00055963
aaaaaagttaaacaaaaaagacttttattttgccgtGGCGCGTGACGTCATCAGGCAGCGCCGCTTcgtcgctgtgattcaactggagaaaggataaagtgtccaaacacagagaaaaactcctgctgaagcgactgatctccacactgttataaagatggcgtttattaaagaagAGAGTGAAGATTGAAgagacattcacagtcaaacaggaagatctgcaggaacaaacagacctaattaaagactACGAGGAGAgtagaggaggaacatcatgtcaaaattgaggacaaaactcatttagagactgatggtgtgttaaaagtgagagacaagagttgttttacctgcactcagtgtggaaagagtttggcaagcaaaagcaaattaaagactcacatgaggatccacactggagagaaaccattcacatgcactcagtgtgggaagagtttcagccactcatcatctcttaatcaacacatgagaatccacactggagagaaaccattcacatgcactcagtgtgggaagagttttagcaaatcatcatcgctttatagacacatgaagatccacaccggaggaaaacctttcacatgcactcagtgtgggaagagtttcaaccactcATCattccttaatctacacatgaggatccacactggagagaaaccattaacatgccctcagtgtgggaagagttttagcaaatcatcgtcgctttataaacacatgaagatccacaccggagaaaaaccattcacatgcactcagtgtgggaagagtttctacGATTCATCATACCTCaaaaaacacatgaggatccacactggagagaaaccattcacatgcgctcagtgtgggaagagttttaactgctcatcacaccttaaaaagcacatgatgatccacactggagaaaaaccattcacatgcactcagtgtgggaagagtttcagcaaatcttCATCGCTTTATAGACATATGAGGATCCATaccggagaaaaaccattcacttgcactcagtgtgggaagagtttcagccactcatcatcccttaatctacacatgaggatccacactggagagaaaccattcacatgccctcagtgtgggaagagtttcatccactcatcacaccttaaacaacacatcatgatccacactggagagaaaccattcacatgcactcaatgtgggaagagtttcagcacatcatcacaccttaaacaacacatgaaaatccacactggtgtgagagagtttatgtgcttggagtgtgagaagacttttattacagctgcaggattgaaacggcaccagaggattcacactggagataaaccgtacaagtgttcacactgcagtaagaggtttactcgctcaggaaccctgaaaacacatgagaggattcacgctGGAGATAAACTGTAGACATGATCAGTGTGTTCTAGGGTTTGttaccgaaaccc

Function

symbol description
si:ch211-162i8.4 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription, DNA-templated.

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDARG00000094484

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00055962 False 726 mRNA 0.44 3 33179354 33180531
TCONS_00055963 True 1475 mRNA 0.43 3 33179367 33189070

Neighbor

gene id symbol gene type direction distance location
XLOC_028905 NA coding downstream 43716 33128015 ~ 33135638 (-)
XLOC_028904 si:dkeyp-4f2.1 coding downstream 105972 33057844 ~ 33073382 (-)
XLOC_028902 NA coding downstream 282221 32758196 ~ 32897133 (-)
XLOC_028903 BX324003.2 coding downstream 290918 32824850 ~ 32888436 (-)
XLOC_028901 BX324003.1 coding downstream 461153 32716854 ~ 32718201 (-)
XLOC_028907 znf1000 coding upstream 121690 33310760 ~ 33331681 (-)
XLOC_028908 si:dkeyp-4f2.3 coding upstream 175396 33364466 ~ 33371634 (-)
XLOC_028909 CT027578.1 coding upstream 201152 33390222 ~ 33390384 (-)
XLOC_028910 CT027578.2 coding upstream 202705 33391775 ~ 33391921 (-)
XLOC_028911 si:dkeyp-4f2.3 coding upstream 210126 33399196 ~ 33405483 (-)
XLOC_028898 CR450785.7 non-coding downstream 921624 32257582 ~ 32257730 (-)
XLOC_028897 CR450785.15 non-coding downstream 922919 32256272 ~ 32256435 (-)
XLOC_028912 NA non-coding upstream 228478 33417548 ~ 33446814 (-)
XLOC_028914 NA non-coding upstream 509656 33698726 ~ 33699784 (-)
XLOC_028916 AL807749.2 non-coding upstream 607622 33796692 ~ 33808943 (-)

Expression


Co-expression Network