G1001838


Basic Information

Item Value
gene id G1001838
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 62047103 ~ 62051505 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1139979
tgTCATTTGGTTGTTCGATTAGATGAAGCATAGGGAAACACATTAAGTTGttgtataaatacaaaatatctgacatatactgaacaaaaatataaatgcaacatgcaacaatttcaaagattttactgagttacagttcatataagaaaatcagtcaattgaaatgcattcattaggctctaatctatggatttcacatgactgaaaATACAGATATGTGTAAGGACAAACTCTGGGAGACGAGATGCAAATACAGGGCGTGAACATTTAATAAACAACGGACATGAAACAACACGGACAGCATCTGGACAGCGAAAACAAAACGACAATGCTGACTTTGGGAtcaaactgaggaacagacagatctAGAGGGGGaaatcaacaaagtgaaggagtccaggtgattCCAATGAAGCGCTGATGTGCGTAATGatagtgacaggtgtgcgtaatgatgggctgCCAGGCGCCCTAGAGCGCCAGAGAGATATGCATCTGGTCACAGAAACTGTACCTTAAAAAAAGTtaagggcgtggatcagaaaaccagtcactatcttgtgtgaccaccatttgcagaACGACATCTCcatcgcatagagttgatcaggctgttgattgtggcctgtggaatgttgttccactcctcttcaatggctgtgcaaagttggatattggcgggagctggaacacgctgtcatacatgtcaatccagagtatcccaaacatgctcaaacaGTGACGTTTGTTGAGCTTGCaagtcatggaagaactgggacattttcagcttccaggaattgtgtacagatccttgcgacatggggccgtgcattatcatgcagaaacgtgaggtgatggcggtggatgaatggcatgacaatgggcctcaggatctcgtcacggtatctctgtgcattcaaattgccatcgataaaatgcaattgtgttcgttgtccatagcttatgccttaTGCCATACCATAACccagccaccatggggcactgttcACAGTGCAAATCTCTCACCCACCCAAAGccgtacacgtggtctgcggttgtgaggctcgTTGGACGTACTACTAAATTctttaaaacaacattggaggaggCTTGTGGTAGAgatattaacattcaattctctggcaacagctctggtggactcCTGCAGTCAgcacttgaaacatctgtggcattgttgtgtgacaaaactgcacattttagtggcctattgtccccagcacaaggtgcatctgtgtaatgatcatgctgtttaatcagcttcttgatatgccacacctgtcaggtggacggattatcttggcaaaggagaaatgctaactgacagggatgtaaacaaatttgtgtacaaaatttgaaagaaataagcattttgatcttttatttcagctcatgaaaaatgggaccaaaactttacatgttgcatttatatttttgttcagtgtagtattccCATTTtaactttgttgtgcttttaaatgcTTGAAAGTGCAGTAATAACACATTTAGATGACCAACTAAACCACAAatctgacattgtttttccattgtaatttggttgtgttttagatgATTAAGATCAAAGTGATAgcacattgggaattcaacaaacttctcTCTTTTTAAGTGGGTGATTAAAGGTTGAAATCTCACTGATCAAtgtcaaccaaatattacccaaatttccacattgaaatgatgtggtgtgcccagtgggcatagcctacacaaacacatacagtacacatacagacaAGGAATCAACATGTTGAATGAGAGAAGATCAGCTTTATACCAGCATATTCAAAACCCATGTAGTACTTCTATTTCTATGTATTTACAAAACATAAcacaagatttttaaaaagaaaaaagaaaatgaACACGTCACAAATGGAAACAAacattaacaaaatgtggaataaaaaATGTAGAACGTTCAAATTTACAAATGCATCTTTCAGTATTTACATTTGTGACTTTGAACTAACATGAAAACAAAAGGCTCTGTACTGGTGTCCTCTAGttcaccatccccctctctctttctgtccatttGTAAGATAATATACATAAAACATAGAGGAGATAGATTTGTGAGCTTTACAGGTATACGTATGGGAGGGAGTAGTAAAATCCACCTCTAAATAATATCGTAATAATCTAACATGGACTAAGGATTAGGTTTAAAACAATACGAGATACACCTACTGTATTTCACCTCCACACAAACTCTCCAAAATACATTAAGATCACAGTTTGTCCGGATGACAATAATAAATTAAGAGAATGATTTAACTCCGTgtttttaaaggcccagtgcagtcaaactagatttgtattttttaaccatttaaaTTGTTAAATATTgaagtaaggtacttaattgttacacagaaatgatttgatattgagataaaaacaactgcattggacctttaagaatACCTTCACACAAACCCTCTACAACCATTGTCAACCATTGTTGCAGTTTTTGTCTTCCTTTTTTCATCAAGATATTTTTTGATATTTGTAAAGCGCTTTTCATTATACAGAATAATCTCAAAAtgcctaaaataaaaaatacaaattgaCACAAGACAGGGCAACTGACACAATTAACCCAGATAACGCTACAAGGGACAAGGACACCAAGGAGCACAGCTATCAACAGAAAGCCTTCCTACAGAGCAAGGTCTTTAGGCCCATTTTAAAGGAGCCCAGAGTCTGTGGTGCCTTCAGGTGGTCATGGAGAGCATTCCAGAGGCTCGGGCGGTCAAGCTGAAAGCCTGATCCACATGGAGCGGAGATTGGTCCTGGGGGCGTGGAGGAGCAGGCTATCGCTTGACCTGCGGGTGGAGTTATGGAGGGAGAGCAGTTATTTGAGATAAGCAGGAGGGTTTTGAATTCAAACCGGAATGAGATGGGGAGCCAGTGCAGAGATGCCAGGATGGGGGTGATGGGATGGTGTTTCCGCACTCTCATCAGGATCGTGGCAGCGTTGTTCTGGGTATATTGGAGCTTCAGGTGACTCCTGCCAGGAATCCCGATGAAGTGTGTTGCAGTAGTCCAGCATTGAGGAGATAAAGGCATGGATGAGTTTCTCTGCGTTAGTCTGAGTAAGGGTGAGAGTTTGGCAATGGTCTTGAGGTGATAGAATGACGCTTGGCTTTACAAAGTTGTTTGATCTGGCTGTCAAAGGTCTGGGAGGAATCAAGCTTTACACCCAGATTGTAAattaagggggagagagggatgttcTGTCCTGCTATGGTCAGGTGTGTTTTTGGTGAGTGCTGGACCTGGTGGGGGCTGCCAACAAGTAGAGCCCCGGAATAAGAGCTCTTGGTGAATGTTCACTGTGGGACCAAGATCTCAAATCACTGAAGCCGTTGCCCAGTTCCAGTCCCACATAGGCTTTATTCCAGGTTGTGTATCCAATGAGAATGAAGTTGACATCTCAATATAATTAATCCAAATCAAGACATAACAACTGCAGGTGGGGAGACAGGCCAGAACGCTATCCTCTCGAATTTCTTTACACTTGAGGGTTTTCAGTTTCTTTTCCACAAGATGGTACATATTTCTGTGTTAACAGACTTAGCACAACTGTGAGTGTGCAGTGACATACATTTATAAATATTCAGAGATGTTTTATTTCAGTTTCTTTATACAGTCTCTGATGGTAGGTGTTGATGAGCAAAGCAGGTCACAAATGTAAAATGGGGAGGAAACAGAAAAGAAGAAGAGGCCAAGGGGAGAATGACGCCTAGGTCCACTGTCCTGGTAGAGATATCACAGAGAGGAAGAGCCGGGAGCTTAGATGACATCACATCCTGTCTCTGTGCGTTCCACCAATCCACACCACTAACTGACCAGCTGGCGAAGCCTTCACACACTCATGGTCATGTTTGGAGAATactgcagagagaaacagaggaaatATTATcaatacataataataattatgGAAATATTATCAATGCATAATAATTTAGTGGGTTCTTATATTTGTCATATTTCACACATGTGAAAT

Function

NR:

description
Transposable element Tcb1 transposase

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1139979 True 4054 lncRNA 0.41 3 62047103 62051505
Loading

Neighbor

gene id symbol gene type direction distance location
f2r LOC106580418 coding upstream 17547 62025867 ~ 62029556 (+)
LOC110536173 LOC106580416 coding upstream 21462 61924355 ~ 62025641 (+)
LOC110536172 LOC106580415 coding upstream 130802 61838597 ~ 61916301 (+)
LOC110536170 LOC106580413 coding upstream 230788 61801041 ~ 61816315 (+)
LOC110536169 LOC106580482 coding upstream 245281 61787232 ~ 61802788 (+)
LOC110536179 LOC106580421 coding downstream 166526 62218031 ~ 62226942 (+)
ikbkb ikbkb coding downstream 358113 62409618 ~ 62444852 (+)
enkd1 enkd1 coding downstream 421306 62472811 ~ 62476981 (+)
LOC110535089 polb coding downstream 428027 62479532 ~ 62485088 (+)
LOC110536190 LOC103397138 coding downstream 439410 62490915 ~ 62494341 (+)
G1001839 NA non-coding upstream 222 62046746 ~ 62046881 (+)
G1001968 NA non-coding upstream 900 62045892 ~ 62046203 (+)
G1001965 NA non-coding upstream 6224 62040648 ~ 62040879 (+)
G1001963 NA non-coding upstream 7863 62038991 ~ 62039240 (+)
G1001923 NA non-coding upstream 126668 61920224 ~ 61920435 (+)
G1002006 NA non-coding downstream 59578 62111083 ~ 62140719 (+)
G1002015 NA non-coding downstream 124565 62176070 ~ 62176486 (+)
G1002049 NA non-coding downstream 132639 62184144 ~ 62184395 (+)
G1002063 NA non-coding downstream 150824 62202329 ~ 62202546 (+)
G1002091 NA non-coding downstream 194096 62245601 ~ 62246378 (+)
LOC110535084 lnpep other upstream 851026 61180837 ~ 61206347 (+)
LOC110536086 LOC106580340 other upstream 2675265 59363887 ~ 59371838 (+)
G998557 LOC106588150 other upstream 3744116 58301585 ~ 58302987 (+)
G997824 NA other upstream 4257932 57787468 ~ 57789171 (+)
G1002117 NA other downstream 249672 62301177 ~ 62302835 (+)
G1004025 LOC106580455 other downstream 1504460 63555965 ~ 63558816 (+)
G1004271 NA other downstream 1583649 63635154 ~ 63636247 (+)
fbrsl1 LOC106580457 other downstream 1970357 64021862 ~ 64363785 (+)

Expression

G1001838 Expression in all Baseline Samples

Bar chart with 20 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 6.
End of interactive chart.

G1001838 Expression in each Bioproject

Bar chart with 21 bars.
G1001838 Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 150.
End of interactive chart.

Co-expression Network