G1002070


Basic Information

Item Value
gene id G1002070
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 62291603 ~ 62445102 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1140229
TAAGAGACAGAGATTGTTTTGTGGTTAGTGCTATAGTGGGGTAGGAGGGTAACATTGCAAAATTCAATTCAAACAGCAGGCCACCCATGTAAAATTAACTCTAAATGAACTGGGAAATGTTAATTGGAGTGGCTATATACATTCCTATGGAGCCTTATGTGCAAAGTACATGTCCAACATTCTATTAGCTGCATATGGAGTGGTGGAAGCAGAGCCATATTCCTAAATATATACTTTACATGTAGCTCTGGGTAGAACAGGAATCAGCTGGAAGGTACTGAGATGGACTGAGTAACAGTCCATTATCTTTGGAGGTGTAGTGTTCTGAGTTTCTTCTGACCTTACTGCATTCTCCCTCTCAGCCCAAGAGTTAAACAATGCATACACATAATGTATTGGAGTACTGGAGGTTCCTCTTGTGCATTGAGTGGTTGTCCCTTCCTCGGTTAAGGCATTGTGATTGATGGACAGGAGTCAGATGAATTCTCACAAGTTCTCTCCAGGTGAGtactgtttttgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtg
>TU1140228
TAAAAATACTGCATAAACTATTACAGTAGAAAAAAACTAACAGGAATACACATGTAAAATACAAATATTAAACATTACTGTCCAAGAGGGTATATATTTGTGAGATAATAAATATGAACACTCACTCAAACATGAACAAATACTGTACTATGTTAGGGAGGTTGAGTCCAAGAGCGTTGCAGTGAAAGAGCTTTCGTTAGATACAAACACCTCCCAGTCCTTTTCAACATAAATCCAACTTTAAAAGACTGGATATGCTGATCGCTGGGCTCAACCCAACGCTTATGGAATGGAGACAGATAATGGTGGCTGTGTTCAGGCTTTAGCTATATTCCAATCTGACAACTCAACGCCTTAATTCATGCCTTTCAAGCATCTGGAAGGTGGGCTTTTCCTCCCATATTTCTTACGCCTATTGAGAACTGTTAGGGGCTGAGGGAGTCAACAAATACAGAGGTATTGGGTTGAGTTTTCAGTTTGGAATGTAGCTGCTGTCTAAGATTGATCCAGCAGATTGTTTTGTGGTTAGTGCTATAGTGGGGTAGGAGGGTAACATTGCAAAATTCAATTCAAACAGCAGGCCACCCATGTAAAATTAACTCTAAATGAACTGGGAAATGTTAATTGGAGTGGCTATATACATTCCTATGGAGCCTTATGTGCAAAGTACATGTCCAACATTCTATTAGCTGCATATGGAGTGGTGGAAGCAGAGCCATATTCCTAAATATATACTTTACATGTAGCTCTGGGTAGAACAGGAATCAGCTGGAAGGTACTGAGATGGACTGAGTAACAGTCCATTATCTTTGGAGGTGTAGTGTTCTGAGTTTCTTCTGACCTTACTGCATTCTCCCTCTCAGCCCAAGAGTTAAACAATGCATACACATAATGTATTGGAGTACTGGAGGTTCCTCTTGTGCATTGAGTGGTTGTCCCTTCCTCGGTTAAGGCATTGTGATTGATGGACAGGAGTCAGATGAATTCTCACAAGTTCTCTCCAGGTGAGtactgtttttgtgtgtgtgtgtgtgtgtgtgtgtgtgtggcatacaGAGGTGGAGATGTGTCAGGTGTCATTGAGGCTCTTTTCCTTTTCTCTCATCCACTTCTCTTCATCCTTATGCCTCCAGCTCAAAGCCCATGCCAACCTTGTGACCGCCTGCGTTGAAGTTTTTCGCATCGATCAGAGCTGAGAGAGTCAGC
>TU1140230
TAAAAATACTGCATAAACTATTACAGTAGAAAAAAACTAACAGGAATACACATGTAAAATACAAATATTAAACATTACTGTCCAAGAGGGTATATATTTGTGAGATAATAAATATGAACACTCACTCAAACATGAACAAATACTGTACTATGTTAGGGAGGTTGAGTCCAAGAGCGTTGCAGTGAAAGAGCTTTCGTTAGATACAAACACCTCCCAGTCCTTTTCAACATAAATCCAACTTTAAAAGACTGGATATGCTGATCGCTGGGCTCAACCCAACGCTTATGGAATGGAGACAGATAATGGTGGCTGTGTTCAGGCTTTAGCTATATTCCAATCTGACAACTCAACGCCTTAATTCATGCCTTTCAAGCATCTGGAAGGTGGGCTTTTCCTCCCATATTTCTTACGCCTATTGAGAACTGTTAGGGGCTGAGGGAGTCAACAAATACAGAGGTATTGGGTTGAGTTTTCAGTTTGGAATGTAGCTGCTGTCTAAGATTGATCCAGCAGATTGTTTTGTGGTTAGTGCTATAGTGGGGTAGGAGGGTAACATTGCAAAATTCAATTCAAACAGCAGGCCACCCATGTAAAATTAACTCTAAATGAACTGGGAAATGTTAATTGGAGTGGCTATATACATTCCTATGGAGCCTTATGTGCAAAGTACATGTCCAACATTCTATTAGCTGCATATGGAGTGGTGGAAGCAGAGCCATATTCCTAAATATATACTTTACATGTAGCTCTGGGTAGAACAGGAATCAGCTGGAAGGTACTGAGATGGACTGAGTAACAGTCCATTATCTTTGGAGGTGTAGTGTTCTGAGTTTCTTCTGACCTTACTGCATTCTCCCTCTCAGCCCAAGAGTTAAACAATGCATACACATAATGTATTGGAGTACTGGAGGTTCCTCTTGTGCATTGAGTGGTTGTCCCTTCCTCGGTTAAGGCATTGTGATTGATGGACAGGAGTCAGATGAATTCTCACAAGTTCTCTCCAGGTGAGtactgtttttgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgcgcgcgcacgtgTGTATTAAACCTACCTCTCGTCGAAGCAGTGTGCAGCAGAGAGGACCCAACAGGAGTCTATGAGGACCCCTCCACACAGGAATAAGTGTGCTTTGTATGTGGACCGGAACACGTTGATGGCTGCCTGCCATGGCTGCTCTGTGATGTCACTCTGCCGGGCCCCCCCCAGGATACGGAAGGAGGGGCGACTGAGATTGTTGTCAGCACGCTGTCCACAGGTACCTATGGGGGGGGCAGTCAATATATCATTTTCAGATGTATAAACCTCAAGGTTtaaagaggaagaaggg

Function

NR:

description
tissue-type plasminogen activator-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1140229 False 555 lncRNA 0.42 3 62291603 62427136
TU1140228 False 1206 lncRNA 0.42 3 62370971 62445102
TU1140230 True 1362 lncRNA 0.43 3 62370971 62376779

Neighbor

gene id symbol gene type direction distance location
LOC110536179 LOC106580421 coding upstream 64661 62218031 ~ 62226942 (+)
f2r LOC106580418 coding upstream 262047 62025867 ~ 62029556 (+)
LOC110536173 LOC106580416 coding upstream 265962 61924355 ~ 62025641 (+)
LOC110536172 LOC106580415 coding upstream 375302 61838597 ~ 61916301 (+)
LOC110536170 LOC106580413 coding upstream 475288 61801041 ~ 61816315 (+)
enkd1 enkd1 coding downstream 27709 62472811 ~ 62476981 (+)
LOC110535089 polb coding downstream 34430 62479532 ~ 62485088 (+)
LOC110536190 LOC103397138 coding downstream 45813 62490915 ~ 62494341 (+)
mrpl40 mrpl40 coding downstream 61670 62506772 ~ 62509975 (+)
cdc45 cdc45 coding downstream 84714 62529816 ~ 62541077 (+)
G1002072 NA non-coding upstream 21067 62268567 ~ 62270536 (+)
G1002091 NA non-coding upstream 45225 62245601 ~ 62246378 (+)
G1002063 NA non-coding upstream 89057 62202329 ~ 62202546 (+)
G1002049 NA non-coding upstream 107208 62184144 ~ 62184395 (+)
G1002015 NA non-coding upstream 115117 62176070 ~ 62176486 (+)
G1002071 vdac3 non-coding downstream 393 62445495 ~ 62464300 (+)
G1002205 NA non-coding downstream 24404 62469506 ~ 62469949 (+)
G1002215 rl6 non-coding downstream 50385 62495487 ~ 62496844 (+)
G1002217 NA non-coding downstream 54989 62500091 ~ 62500306 (+)
G1002218 NA non-coding downstream 60331 62505433 ~ 62505709 (+)
LOC110536169 LOC106580482 other upstream 500807 61787232 ~ 61802788 (+)
LOC110535084 lnpep other upstream 1095526 61180837 ~ 61206347 (+)
LOC110536086 LOC106580340 other upstream 2919765 59363887 ~ 59371838 (+)
G998557 LOC106588150 other upstream 3988616 58301585 ~ 58302987 (+)
G997824 NA other upstream 4502432 57787468 ~ 57789171 (+)
G1004025 LOC106580455 other downstream 1110863 63555965 ~ 63558816 (+)
G1004271 NA other downstream 1190052 63635154 ~ 63636247 (+)
fbrsl1 LOC106580457 other downstream 1576760 64021862 ~ 64363785 (+)
G1007008 NA other downstream 3453646 65898748 ~ 65899368 (+)

Expression

G1002070 Expression in all Baseline Samples

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The chart has 1 Y axis displaying values. Range: 0 to 60.
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G1002070 Expression in each Bioproject

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G1002070 Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 1500.
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Co-expression Network