XLOC_028909 (CT027578.1)


Basic Information

Item Value
gene id XLOC_028909
gene name CT027578.1
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007115.7
NCBI id CM002888.2
chromosome length 78093715
location 33390222 ~ 33390384 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00055966
ATATTTACCttgcaggggagataccatgatcaagaaggtggttcacccagggcgacgCTTAGCCATTGTACTCCGGTCACGCTGACCTctgccagcgcagagagacggaaagtcactttccacaatgttttcattcagtgttctacgctggtggaatcacctt

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDARG00000082253

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00055966 True 163 snRNA 0.50 1 33390222 33390384

Neighbor

gene id symbol gene type direction distance location
XLOC_028908 si:dkeyp-4f2.3 coding downstream 18588 33364466 ~ 33371634 (-)
XLOC_028907 znf1000 coding downstream 58541 33310760 ~ 33331681 (-)
XLOC_028906 si:ch211-162i8.4 coding downstream 201152 33179354 ~ 33189070 (-)
XLOC_028905 NA coding downstream 254584 33128015 ~ 33135638 (-)
XLOC_028904 si:dkeyp-4f2.1 coding downstream 316840 33057844 ~ 33073382 (-)
XLOC_028910 CT027578.2 coding upstream 1391 33391775 ~ 33391921 (-)
XLOC_028911 si:dkeyp-4f2.3 coding upstream 8812 33399196 ~ 33405483 (-)
XLOC_028912 NA coding upstream 27164 33417548 ~ 33446814 (-)
XLOC_028913 CT027801.2 coding upstream 133853 33524237 ~ 33525219 (-)
XLOC_028914 NA coding upstream 308342 33698726 ~ 33699784 (-)
XLOC_028902 NA non-coding downstream 493089 32758196 ~ 32897133 (-)
XLOC_028901 BX324003.1 non-coding downstream 672021 32716854 ~ 32718201 (-)
XLOC_028898 CR450785.7 non-coding downstream 1132492 32257582 ~ 32257730 (-)
XLOC_028897 CR450785.15 non-coding downstream 1133787 32256272 ~ 32256435 (-)
XLOC_028916 AL807749.2 non-coding upstream 406308 33796692 ~ 33808943 (-)
XLOC_028917 NA non-coding upstream 568991 33959375 ~ 33961465 (-)

Expression


Co-expression Network