XLOC_028917


Basic Information

Item Value
gene id XLOC_028917
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007115.7
NCBI id CM002888.2
chromosome length 78093715
location 33959375 ~ 33961465 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00057370
CTGGTAATTAGAATAACCGAGACAAAACTGTGTTAAAATCAGttaaagttgatttttttttagtattaaagTATACATTTTTCTTATCTTAACATCCACAGAGTACTTTGACAGTTACCTCAGAATGTGCTGGGTCACTGTGTGTTGACCCACCAGATGACCTTCTAGGTTGAACGTCAGAAGAAGCCAAGGCAATAACTGATGAGGCTGATACAGGAGCTGATGAAGAAGACAAGGCAAGAACTGATGAGGCTGATacaggagccgatgaagaagccaaggcaggaactgatgaggctgatACAGGAGCTGATGAAGAAGCCGAGGCAAAAACTgatgaggctgatgcaggagccgatgaagaagccgAGGAAAAAACTgacgaggctgatgcaggagccgatgaagaagaaTGGCAaggaactgatgaggctgatgcaggagccgatgaagaagactggcaaggaactgatgaggctgacgcaggagccgatgaagaagactggccaggaactgatgaggctgatgcaggagcctcCAATAAAGAAGTCGACGCAGGAGCCTTCAACAAAAGGGGCTGAGTGGTTTCTTCAGCAGACCGCCTTTGTCCTCAACTGCTAaagaaggacaaaaaaaaaaaacacaatataggCAAAAGTCAGTGTCAAAGCAGCAAGAAGACAATCTCATCAGCACAGTGTTTTGATGTTGTGTTTCATTGATTATGCTATGGTACATAAACAATTAAAGACAATAATAAAGGGTTatacacactgcaaattttagattgtagatttaactaccttagagttcaaattaacactccctcagtgtttat

Function

GO:

id name namespace
GO:0007178 transmembrane receptor protein serine/threonine kinase signaling pathway biological_process
GO:0001704 formation of primary germ layer biological_process
GO:0048729 tissue morphogenesis biological_process
GO:0001706 endoderm formation biological_process
GO:0019219 regulation of nucleobase-containing compound metabolic process biological_process
GO:0001711 endodermal cell fate commitment biological_process
GO:0019222 regulation of metabolic process biological_process
GO:0001714 endodermal cell fate specification biological_process
GO:0007492 endoderm development biological_process
GO:0007498 mesoderm development biological_process
GO:0080090 regulation of primary metabolic process biological_process
GO:0018130 heterocycle biosynthetic process biological_process
GO:0006351 transcription, DNA-templated biological_process
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0043011 myeloid dendritic cell differentiation biological_process
GO:0051171 regulation of nitrogen compound metabolic process biological_process
GO:0006366 transcription by RNA polymerase II biological_process
GO:0036342 post-anal tail morphogenesis biological_process
GO:0002030 inhibitory G protein-coupled receptor phosphorylation biological_process
GO:0001773 myeloid dendritic cell activation biological_process
GO:0038092 nodal signaling pathway biological_process
GO:0032924 activin receptor signaling pathway biological_process
GO:0032925 regulation of activin receptor signaling pathway biological_process
GO:0045165 cell fate commitment biological_process
GO:0097659 nucleic acid-templated transcription biological_process
GO:0031323 regulation of cellular metabolic process biological_process
GO:0060429 epithelium development biological_process
GO:0090092 regulation of transmembrane receptor protein serine/threonine kinase signaling pathway biological_process
GO:1903224 regulation of endodermal cell differentiation biological_process
GO:0010453 regulation of cell fate commitment biological_process
GO:0060974 cell migration involved in heart formation biological_process
GO:0060975 cardioblast migration to the midline involved in heart field formation biological_process
GO:0051252 regulation of RNA metabolic process biological_process
GO:0010470 regulation of gastrulation biological_process
GO:1904323 regulation of inhibitory G protein-coupled receptor phosphorylation biological_process
GO:1904325 positive regulation of inhibitory G protein-coupled receptor phosphorylation biological_process
GO:0009953 dorsal/ventral pattern formation biological_process
GO:0051281 positive regulation of release of sequestered calcium ion into cytosol biological_process
GO:0007369 gastrulation biological_process
GO:0003260 cardioblast migration biological_process
GO:0060255 regulation of macromolecule metabolic process biological_process
GO:0003002 regionalization biological_process
GO:1900107 regulation of nodal signaling pathway biological_process
GO:0007389 pattern specification process biological_process
GO:0010524 positive regulation of calcium ion transport into cytosol biological_process
GO:0060795 cell fate commitment involved in formation of primary germ layer biological_process
GO:0032774 RNA biosynthetic process biological_process
GO:1903587 regulation of blood vessel endothelial cell proliferation involved in sprouting angiogenesis biological_process
GO:1903589 positive regulation of blood vessel endothelial cell proliferation involved in sprouting angiogenesis biological_process
GO:0019438 aromatic compound biosynthetic process biological_process
GO:0060029 convergent extension involved in organogenesis biological_process
GO:0035987 endodermal cell differentiation biological_process
GO:0042659 regulation of cell fate specification biological_process
GO:0042663 regulation of endodermal cell fate specification biological_process
GO:0003318 cell migration to the midline involved in heart development biological_process
GO:0097028 dendritic cell differentiation biological_process
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0003677 DNA binding molecular_function
GO:0060182 apelin receptor activity molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specific molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00057370 True 838 lncRNA 0.43 2 33959375 33961465

Neighbor

gene id symbol gene type direction distance location
XLOC_028916 AL807749.2 coding downstream 150432 33796692 ~ 33808943 (-)
XLOC_028915 si:ch211-197f20.1 coding downstream 196007 33720803 ~ 33763368 (-)
XLOC_028914 NA coding downstream 259591 33698726 ~ 33699784 (-)
XLOC_028913 CT027801.2 coding downstream 434156 33524237 ~ 33525219 (-)
XLOC_028912 NA coding downstream 512561 33417548 ~ 33446814 (-)
XLOC_028918 CABZ01060112.2 coding upstream 5452 33966917 ~ 33967068 (-)
XLOC_028919 CABZ01060112.1 coding upstream 6745 33968210 ~ 33968352 (-)
XLOC_028920 CT025695.1 coding upstream 397710 34359175 ~ 34362421 (-)
XLOC_028921 CT025695.2 coding upstream 427687 34389152 ~ 34390120 (-)
XLOC_028922 si:ch211-64i20.3 coding upstream 482185 34443650 ~ 34480611 (-)
XLOC_028910 CT027578.2 non-coding downstream 567454 33391775 ~ 33391921 (-)
XLOC_028909 CT027578.1 non-coding downstream 568991 33390222 ~ 33390384 (-)
XLOC_028923 NA non-coding upstream 525507 34486972 ~ 34494646 (-)

Expression


Co-expression Network