G1005800 (zdhhc8)


Basic Information

Item Value
gene id G1005800
gene name zdhhc8
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 64615414 ~ 64617475 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1144311
TAGAAATATGACTGTTGTATCTACTGAATGTACCGAAGCTTACTTTAGACTGGAGGATACTGGTGTGGATCCCGTTGTTGCTGACCTTGATGCtgatctgtctgtcagagaggtCTGGTCTGATGAAGGGGGGTTGGATGGAGACAGGGGgcttcttcctggggtccacaccaTTGTACCtgtacagaggagaggagagacgactCATCGTATGAGAGTTAGCctgagtcGTCTCTCCTCTATATGGGAGTAGGGGGCAATTTCAATGGTGGATGATGACTATAATAAAACGGTTTCAGTCTCCACCTGGGTATTGTCTATCTGTGGCTATGTATACTGTTAATTTTATCAGTGTAATATCTCCCAAAAGGTCTCTTTAAATCAGGCTCTGAGGTCTGGCtgctgaatgtgtgtttgtgcttgatTTCCCCTTAACTTTTGTGTGATTCAGTTCTCCCAGCCATCCTCTGGGGGTATAGGTGACttcctccaggcagagaaaacacacacacacacacacacacacgcacctaccTCTTTGGACATTGCTGCAGTTCTATCTCAGCAGTCTACTCAGAATGACTACAGCAGAACAGGTACCATGGCAACCCCGTTGGTCTTGGTTACCGCTGagcttttttaaaaacatttatatttttctccccaatttcatgattacaatcttgtctcattgctgcaactccccaacaggcttgggagaggtgaaggtcgagccatgcgtcctcctgctcgcttaacccagaagccagacacaccaatgtgtcggaggaaacaccgctcATATGACGACCGAAGTCAGACTGCAGGcaccggcccaccacaaggagtcgctagagcgtgatgagccaagtaaagcaccCCCGGCCAAACCATCctcaacccggacgacgctgggtcgaTTGTGACCGCTGACCTTTTATTGCCCGTCTATCCGGCTCCCACCACCCACACCCCCTGACCTACAGTAGGAAACCATGTCCTCCTTACCTGGGCGCCAGGGGAGCACACAGGACATACTTGATGTTGCCACAGCAACCCCGCGTGAAGGGATTTACTCCTCCACGGAACTTGCCCGTCACCTGAGGAACAGAAGGCTTTGTTAGAATGGGGGAAGACGCAaggcctgaacacacacacagctagaacTAGCTAGCAGATTTGAGTTGGCAAGTGAAGCTGCAATGCTGATATTGTGTCCTGTGTGATACATGgtagaatgtactgtatgtttgtgagtgtgtgtgtgtctggttaaGCCGCTCTTAGCTGTGCCCCTTCTCACCTGTTCGTTAGTGGTGCGACCTCTGGCGACAAGGACCATATGGAAGCCTGTCAGGCCTATGACTGGAATGAAGAAGAGCCCTGCTATACACATCACCGTGACGGTGGTGTGCAACGTGCCCAGCTGCTCCATGTGGTGCAGCACGAACAGCAGGCCGAAGGAGAACACGCCCACCATGTGGATGCTTAGCGACAGCAGGAACAGGAAGAAGTAACGGTAGTTCCTACGCCCGATACAGTTGTTCACCCAGGGGCAGTGGTggtcaaag

Function

symbol description
zdhhc8 Enables palmitoyltransferase activity. Involved in peptidyl-L-cysteine S-palmitoylation and positive regulation of cholesterol efflux. Located in Golgi apparatus.

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1144311 True 1571 lncRNA 0.51 4 64615414 64617475

Neighbor

gene id symbol gene type direction distance location
LOC110536230 LOC106580464 coding downstream 99086 64509358 ~ 64516328 (-)
LOC110536227 LOC106580460 coding downstream 142471 64448162 ~ 64472943 (-)
LOC110536222 LOC106580456 coding downstream 856994 63628512 ~ 63758420 (-)
atad1a LOC106580455 coding downstream 1056406 63552161 ~ 63559008 (-)
LOC110535092 NA coding downstream 1207250 63374900 ~ 63408164 (-)
LOC110536235 LOC106580467 coding upstream 18744 64636219 ~ 64642155 (-)
dgcr8 LOC106580468 coding upstream 41523 64658998 ~ 64668914 (-)
LOC110536236 LOC106580470 coding upstream 54534 64672009 ~ 64703007 (-)
LOC100653466 LOC106580488 coding upstream 487140 65104615 ~ 65113617 (-)
LOC110536248 LOC106580495 coding upstream 1322631 65940106 ~ 66043855 (-)
G1005665 NA non-coding downstream 135462 64403448 ~ 64479952 (-)
G1005628 LOC106580457 non-coding downstream 254391 64360764 ~ 64363777 (-)
G1005626 NA non-coding downstream 256969 64358051 ~ 64358445 (-)
G1005406 NA non-coding downstream 557656 64055463 ~ 64057758 (-)
G1005373 NA non-coding downstream 605029 64010178 ~ 64010385 (-)
G1005824 LOC106580466 non-coding upstream 28438 64645913 ~ 64648075 (-)
G1006094 NA non-coding upstream 469209 65086684 ~ 65086883 (-)
G1006098 NA non-coding upstream 473720 65091195 ~ 65091537 (-)
G1006104 NA non-coding upstream 480000 65097475 ~ 65097992 (-)
G1006327 NA non-coding upstream 655827 65273302 ~ 65274706 (-)
G1004487 NA other downstream 813412 63801529 ~ 63802002 (-)
LOC110536206 LOC106580443 other downstream 1869166 62740236 ~ 62804200 (-)
LOC110536201 LOC106580439 other downstream 1926092 62663428 ~ 62689389 (-)
LOC110536162 NA other downstream 2973983 61636026 ~ 61657316 (-)
G1006106 NA other upstream 481485 65098960 ~ 65099556 (-)
G1007506 NA other upstream 1755167 66372642 ~ 66372949 (-)
G1009720 NA other upstream 3353596 67971071 ~ 67971328 (-)
G1010443 NA other upstream 4069782 68687257 ~ 68687962 (-)
G1010922 NA other upstream 4499032 69116507 ~ 69119486 (-)

Expression


Co-expression Network