XLOC_028923


Basic Information

Item Value
gene id XLOC_028923
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007115.7
NCBI id CM002888.2
chromosome length 78093715
location 34486972 ~ 34494646 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00057371
CCCATCAAAAACTCTCTGCCTATTTATTGAAAGCTGAAGGGCTGCTACAGTAAAACTCGCTGCTACACATGGCGTTTGCATCGCGTTGGTGATTCATCACATGAGTGTCATGTTACAAGCCTTCATCTTGTCTGTGGCACTGCATGGCATCTACAAGAGACTGAATCTACACTAGGACGGCGACTTTACACGGTTAACTGGGAAAACTCTTCATGAAAGACTGAAAGGTGACTGCAAACAAACGTTGTGGACTCAGAGCAGGTTGCTGATTTAAGTTGTAGACAGACAAAATGGACGACACAGCAGAGCAAATGGCAGCACAAGCAAGTCAAAGGTACAGCTCGGAAGAATGCCTTGAGCTTTTAGTGTCCCTTCGGCAAGCAGAGCGaggtatgttttgtttattgtttgatttatttggaaaatgttagatgttttgtaaatgtttgttgtttatttttctatgttgtttgtttgttttctctagTTTTACGGTGCTTTTGGTGCCTTTGGTCTTTTGATGCTTCTGTGTATACAACAAAGAACTGAGACGATGATTTATGTGATGAACTTTATTGCATCCAAGTAAACCCTTTTAAATGCACCTGTCAAAAACTCTCTGCCTATTTATCGAAAGCTGAAGGGCtgctacaaataaaatatataacaaatgcatgagagaaataagaggaaatgagaggttactataaacataaaaacgaacaggtc
>TCONS_00057372
ttcttaacaaaactcaaatccttaagtgTAACTGCCCATGATTTAATGCACTCGCTTTGCTTGCCCTAATTGgagtcaccacaggagggcgctctAGACTTATAGGATTTAAGTGAGACAAAGCAGAGTAAGAGCAATTCACGTTTGTTCACGAGCTAACAGGTACAGCTCGGAAGAATGCCTTGAGCTTTTAGTGTCCCTTCGGCAAGCAGAGCGagTTTTACGGTGCTTTTGGTGCCTTTGGTCTTTTGATGCTTCTGTGTATACAACAAAGAACTGAGACGATGATTTATGTGATGAACTTTATTGCATCCAAGTAAACCCTTTTAAATGCACCTGTCAAAAACTCTCTGCCTATTTATCGAAAGCTGAAGGGCtgctacaaataaaatatataacaaatgcatgagagaaataagaggaaatgagaggttactataaacataaaaacgaacaggtc

Function

GO:

id name namespace
GO:0001704 formation of primary germ layer biological_process
GO:0048729 tissue morphogenesis biological_process
GO:0001706 endoderm formation biological_process
GO:0019219 regulation of nucleobase-containing compound metabolic process biological_process
GO:0001711 endodermal cell fate commitment biological_process
GO:0019222 regulation of metabolic process biological_process
GO:0001714 endodermal cell fate specification biological_process
GO:0016070 RNA metabolic process biological_process
GO:0007492 endoderm development biological_process
GO:0080090 regulation of primary metabolic process biological_process
GO:0018130 heterocycle biosynthetic process biological_process
GO:0006351 transcription, DNA-templated biological_process
GO:0008152 metabolic process biological_process
GO:0065007 biological regulation biological_process
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0051171 regulation of nitrogen compound metabolic process biological_process
GO:0006366 transcription by RNA polymerase II biological_process
GO:0036342 post-anal tail morphogenesis biological_process
GO:0002030 inhibitory G protein-coupled receptor phosphorylation biological_process
GO:0090304 nucleic acid metabolic process biological_process
GO:0009058 biosynthetic process biological_process
GO:0009059 macromolecule biosynthetic process biological_process
GO:1901576 organic substance biosynthetic process biological_process
GO:0009888 tissue development biological_process
GO:0009889 regulation of biosynthetic process biological_process
GO:0097659 nucleic acid-templated transcription biological_process
GO:0031323 regulation of cellular metabolic process biological_process
GO:0060429 epithelium development biological_process
GO:0031326 regulation of cellular biosynthetic process biological_process
GO:0006139 nucleobase-containing compound metabolic process biological_process
GO:0090092 regulation of transmembrane receptor protein serine/threonine kinase signaling pathway biological_process
GO:1903224 regulation of endodermal cell differentiation biological_process
GO:0009653 anatomical structure morphogenesis biological_process
GO:0010453 regulation of cell fate commitment biological_process
GO:0051252 regulation of RNA metabolic process biological_process
GO:0006725 cellular aromatic compound metabolic process biological_process
GO:1901360 organic cyclic compound metabolic process biological_process
GO:1903506 regulation of nucleic acid-templated transcription biological_process
GO:1901362 organic cyclic compound biosynthetic process biological_process
GO:0048598 embryonic morphogenesis biological_process
GO:0010467 gene expression biological_process
GO:0044237 cellular metabolic process biological_process
GO:0010468 regulation of gene expression biological_process
GO:0044238 primary metabolic process biological_process
GO:1904323 regulation of inhibitory G protein-coupled receptor phosphorylation biological_process
GO:1904325 positive regulation of inhibitory G protein-coupled receptor phosphorylation biological_process
GO:0044249 cellular biosynthetic process biological_process
GO:0044260 cellular macromolecule metabolic process biological_process
GO:0051281 positive regulation of release of sequestered calcium ion into cytosol biological_process
GO:0044271 cellular nitrogen compound biosynthetic process biological_process
GO:0007369 gastrulation biological_process
GO:0071704 organic substance metabolic process biological_process
GO:0060255 regulation of macromolecule metabolic process biological_process
GO:0043170 macromolecule metabolic process biological_process
GO:0010524 positive regulation of calcium ion transport into cytosol biological_process
GO:0050789 regulation of biological process biological_process
GO:0050794 regulation of cellular process biological_process
GO:0006807 nitrogen compound metabolic process biological_process
GO:0060795 cell fate commitment involved in formation of primary germ layer biological_process
GO:2001141 regulation of RNA biosynthetic process biological_process
GO:0032774 RNA biosynthetic process biological_process
GO:1903587 regulation of blood vessel endothelial cell proliferation involved in sprouting angiogenesis biological_process
GO:1903589 positive regulation of blood vessel endothelial cell proliferation involved in sprouting angiogenesis biological_process
GO:0019438 aromatic compound biosynthetic process biological_process
GO:0010556 regulation of macromolecule biosynthetic process biological_process
GO:0034645 cellular macromolecule biosynthetic process biological_process
GO:0034654 nucleobase-containing compound biosynthetic process biological_process
GO:0035987 endodermal cell differentiation biological_process
GO:2000112 regulation of cellular macromolecule biosynthetic process biological_process
GO:0042659 regulation of cell fate specification biological_process
GO:0046483 heterocycle metabolic process biological_process
GO:0042663 regulation of endodermal cell fate specification biological_process
GO:0009790 embryo development biological_process
GO:0001702 gastrulation with mouth forming second biological_process
GO:0005634 nucleus cellular_component
GO:0043231 intracellular membrane-bounded organelle cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0003677 DNA binding molecular_function
GO:0060182 apelin receptor activity molecular_function
GO:0003690 double-stranded DNA binding molecular_function
GO:0097159 organic cyclic compound binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:0000976 transcription regulatory region sequence-specific DNA binding molecular_function
GO:0000977 RNA polymerase II transcription regulatory region sequence-specific DNA binding molecular_function
GO:0000978 RNA polymerase II cis-regulatory region sequence-specific DNA binding molecular_function
GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specific molecular_function
GO:1901363 heterocyclic compound binding molecular_function
GO:0000987 cis-regulatory region sequence-specific DNA binding molecular_function
GO:0140110 transcription regulator activity molecular_function
GO:0001067 regulatory region nucleic acid binding molecular_function
GO:1990837 sequence-specific double-stranded DNA binding molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00057371 False 729 lncRNA 0.40 3 34486972 34494214
TCONS_00057372 True 460 lncRNA 0.40 2 34486972 34494646

Neighbor

gene id symbol gene type direction distance location
XLOC_028922 si:ch211-64i20.3 coding downstream 6361 34443650 ~ 34480611 (-)
XLOC_028921 CT025695.2 coding downstream 96852 34389152 ~ 34390120 (-)
XLOC_028920 CT025695.1 coding downstream 124551 34359175 ~ 34362421 (-)
XLOC_028919 CABZ01060112.1 coding downstream 518620 33968210 ~ 33968352 (-)
XLOC_028918 CABZ01060112.2 coding downstream 519904 33966917 ~ 33967068 (-)
XLOC_028924 NA coding upstream 24858 34519504 ~ 34520936 (-)
XLOC_028925 AL645691.2 coding upstream 58421 34553067 ~ 34589087 (-)
XLOC_028926 si:ch211-237a4.2 coding upstream 258973 34753619 ~ 34776147 (-)
XLOC_028927 NA coding upstream 303147 34797793 ~ 34799395 (-)
XLOC_028928 NA coding upstream 353114 34847760 ~ 34857130 (-)
XLOC_028917 NA non-coding downstream 525507 33959375 ~ 33961465 (-)
XLOC_028929 NA non-coding upstream 557793 35052439 ~ 35053350 (-)

Expression


Co-expression Network