XLOC_028925 (AL645691.2)


Basic Information

Item Value
gene id XLOC_028925
gene name AL645691.2
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007115.7
NCBI id CM002888.2
chromosome length 78093715
location 34553067 ~ 34589087 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00055986
atggcagaggagcgagtcaaggactctctctcagagaaacacagtgtgagatcaggatcatgtgtgtccagctctgtgtctctgaagagtgaccggtcTAAAGATCGTCCACTAAActtcagagagaaaacaccatcatctgccaaAAGctcagttcatcagaagagagcagaagcagagcccagctgtctgtctatgaagagtgaccaGTCTATGGGTGTACCAATAACATTTAAGAGTGAAAACACAcgacctgctgtcagtgtggatggagatgatcagactggagacctgcagcaggattcactccaaccagaacatgatgaacttcagagagtcaaagagcagcacaaaaccagcatgaagaacaagtatgagagattatttgagggaatcaaccatggagagactcaaaccctcctgaacaggatctacacacagctctacatcatagaaggagagagtgaaggagtgaatgaagaacatgaggttttacagatggagaaaagagccagaacaaaaccctcacaacacactccagtctactgcaatgacatctttaaagcctcagctggagcaggacatgaggagaagatcaagaaggagaaagcccagatcaagactgttctcactaaaggcatcgctggaatcgggaaaaccgtctctgtgcagaagttcattctggactgggccgagggaaaagaccatcaggatgtagatttcatgtttgtgcttccatttcgagagctgaacttgatcagagatcatcagtacagtcttcacagacttctgctggactttcatcctgaacttgaagatctggagcccaagatttatgagcagtgtagagttgtgttcatctttgatggtctggatgaaagcagaatcacactcaacttttcagatgaggagaaagtttgtgctgtgactgaatcttcatcagtggctgtgttgatgcggagcctcctgaaaggagatctgcttccctctgctctcatctggatcacctccagaccagcagcagcccatcagatcccctccagatacatcaagcgtctgacagagattcagggattcactgagcctcagaaggaggaatatttcaggaagagaatcagcgacgagcatcaagccagcagaatcatctcccacatcagaagagcaagaagcctccagatcatgtgccacatacccgtcttctgctggatctcctccactgtgcttcagaagctcctggaagaagatgtgagagcagaaatccctcaaactctgactgagatgtacatccacttcctgctgattcagatcaacatgaggaagcagaagtatgaagagagagatccaaaGAATCTGCAgggagatccagagaaactgcagtccaacagaggagtTATCAGCAAACTtaaagtggctttcagacagctaaAGATCAACgtgaggaagcagaagtatgaagagagaaaTCCAAAGAATCTGCAGGGAGATCCAAAGAAtctgcagtccaacagaggagtgatcctcaaacttgctgaagtggctttcagacagctgatgaagggcaatgtgatgttctatgaggaggacctgattgagagcggcatagacgtcactgacgcctcagtgtattctgggatctgcactgagatcttcaaggaggaatctgtgattcatcagaggaaagtctacagcttcatccatctcagctttcaggagtttctggctgctttctttgtgttttactgccatttaacagagaacagagaaccgcTGAGGGTGATTTATGATGAAGAATATTCAGATGATGAAGAATATGAATATTCATATGATCAATATCTACAGTCCAGCTCTGAGGAGTCTCTGTATGTTCTGCTCAGTTCAGCAGTAGATAAAGCTGTCaggagtagtaatggtcatctggatctgttcctgcggttcctgctgggcgtctcactgaagtccaatcagagactcttccaggatctgctgacacacacagagaagagctcagagaacatcaggagaatcacacagtacattaaagacaTGATCAAGAGAGATAAACatctctcagctgaaagatccatcaatctgttcctctgtctgctggaggtgaaagatcagactctggccagagagattcaggagtttgtgaaatcagacaaacactcagaggagaaactctctcctgctcactgctcaacaatctcctacatgattgagatgtcagaggagccgctggatgagttagactttaataaattcaacacatcagctgagggaagacggagactgacagcagctgtgagaaactgcagaagagctctgctacagtggtgtgaactcactgttcagtgctgtgagagtttgtcttcagctctacaatcctcaaactgtgtgctgagagagctggacctgagtaacaatgacctgcaggattcaggagtgaagcttctctctgatggactgaagagtcaacactgtaaactggagacactgagtgctgtaaactcactgttcagtgctgtgagagtttgtcttcagctctacaatcctcaaactgtgtgctgagagagctggacctgagtaacaatgacctgcaggattcaggagtgaagaagctctctgatggactgaagaatcaacactgtaaactggacacactgagattggccacatgtaaactcactgttcagtgctgtgagagtttgtcttcagctctacaatcctcaaactgtgtgctgagagagctggacctgagtaacaatgacctgcaggattcaggagtgaagcttctctctgatggactgaagagtcaacactgtaaactggagacactgagactggtcatgtgtaatctcactgttcagtgctgtgagagtttgtcttcagctctacaatgctcaaactgtgtgctgagagagctggacctgagtaacaatgacctgcaggattcaggagtgaagaagctctctgatggactgaagagtcgacactgtaaactggacacactgagattggccatgtgtaaactcactgttcagtgctgtgagagtttgtgttcagctctacaatcctcaaactgtgtgctgagagagctggacctgagtaacaatgacctgcaggattcaggagtgaagaagctctctgatggactgaagattcaacactgtaaactggacacactgagattgtctggctgtatggtgacagaggaaggctgtggttttctgtcttcagctctgacttcaaacccctcacacctgagagagctggatctgagctacaatcatccaggagattcaggagtcaagctgctctctgaacaactggaggatccaaactacacactggacaaactcaatctggatcatggaggacacacgaggattacagcaggaccacgcaaatatgtctgttttctcactctggatccaaacacagcaaacactcgactcattctgtctgaggagaacagagaggtgaagcgtgtgagagagaatcagccgtatcctgatcatccacacagatttgatgATTAtcgtcaggtgttgtgcagagagagtgtgtgtggacgctgttactgggagattgactggagtggagattatggtgtgtgtatatcagtgtcatataagagcatcaggaggaagggaggaggtgttgagtgttggtttggaaataatgctcagtcctggagtttgttctgtgattcctccagtttctcattcagtcacaataacacacacactgttctCCCAGTGAAGcggctcagcaggagaataggagtgtttgtggatcacagtgcaggaactctgatcttctacaacatctatagagacacaatgagcctcatccactcagtccagaccacattcactgagccgctctgtgctgggtttggGCTTTAttattctggatcatcagtgaaactgagctga
>TCONS_00057373
TTATCACTGTACACTGAACTCATGGacactcaacactgctcatttcttactgctgattgtgttgctctttgtcctctacacaggctacagtggtgtgaactcactgttcagtgctgtgagagtttgtcttcagctctacaatcctcaaactgtgtgctgagagagctggacctgagtaacaatgacctgcaggattcaggagtgaagcttctctctgatggactgaagagtcaacactgtaaactggagacactgaggctacagtgctgtaaactcactgttcagtgctgtgagagtttgtcttcagctctacaatcctcaaactgtgtgctgagagagctggacctgagtaacaatgacctgcaggattcaggagtgaagaagctctctgatggactgaagaatcaacactgtaaactggacacactgagattggccacatgtaaactcactgttcagtgctgtgagagtttgtcttcagctctacaatcctcaaactgtgtgctgagagagctggacctgagtaacaatgacctgcaggattcaggagtgaagcttctctctgatggactgaagagtcaacactgtaaactggagacactgagactggtcatgtgtaatctcactgttcagtgctgtgagagtttgtcttcagctctacaatgctcaaactgtgtgctgagagagctggacctgagtaacaatgacctgcaggattcaggagtgaagaagctctctgatggactgaagagtcgacactgtaaactggacacactgagattggccatgtgtaaactcactgttcagtgctgtgagagtttgtgttcagctctacaatcctcaaactgtgtgctgagagagctggacctgagtaacaatgacctgcaggattcaggagtgaagaagctctctgatggactgaagattcaacactgtaaactggacacactgagTATGAAATGTTGCACTTTCAGAGCTTCTCTTTTTCCAATATACCCAAATGATATGGCAAGCTATTTTTCACTAGTCCAAGTCCAGTTTGACCTTATTAAGTTATTCTCAGCATCCATGGCTGATCTATGCATCCTAAGAGCTTGCATattgtctggctgtatggtgacagaggaaggctgtggttttctgtcttcagctctgacttcaaacccctcacacctgagagagctggatctgagctacaatcatccaggagattcaggagtcaagctgctctctgaacaactggaggatccaaactacacactggacaaactcaagtatgtggagcagcactggccttgtgcttttacactgaatggctttaaaaagacactagaaagctcttttgtgatcagc

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDARG00000102716

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00055986 False 3938 unprocessed_pseudogene 0.46 12 34553067 34589087
TCONS_00057373 True 1353 lncRNA 0.45 9 34555326 34574142

Neighbor

gene id symbol gene type direction distance location
XLOC_028924 NA coding downstream 32131 34519504 ~ 34520936 (-)
XLOC_028923 NA coding downstream 58421 34486972 ~ 34494646 (-)
XLOC_028922 si:ch211-64i20.3 coding downstream 72456 34443650 ~ 34480611 (-)
XLOC_028921 CT025695.2 coding downstream 162947 34389152 ~ 34390120 (-)
XLOC_028920 CT025695.1 coding downstream 190646 34359175 ~ 34362421 (-)
XLOC_028926 si:ch211-237a4.2 coding upstream 164532 34753619 ~ 34776147 (-)
XLOC_028927 NA coding upstream 208706 34797793 ~ 34799395 (-)
XLOC_028928 NA coding upstream 258673 34847760 ~ 34857130 (-)
XLOC_028929 NA coding upstream 463352 35052439 ~ 35053350 (-)
XLOC_028930 NA coding upstream 471060 35060147 ~ 35083283 (-)
XLOC_028919 CABZ01060112.1 non-coding downstream 584715 33968210 ~ 33968352 (-)
XLOC_028931 BX000703.1 non-coding upstream 644210 35233297 ~ 35233413 (-)

Expression


Co-expression Network