XLOC_028926 (si:ch211-237a4.2)


Basic Information

Item Value
gene id XLOC_028926
gene name si:ch211-237a4.2
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007115.7
NCBI id CM002888.2
chromosome length 78093715
location 34753619 ~ 34776147 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00055987
atatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatgtatgtgtgtatgattgtttcctgaaagctctgctaatgtctgcattggtgttttagctgcagtatggcagaggagcgggtaaaggactctctctcagagacacacagtgtgagatcaggatctcgtgtgtccagctctgtgtctctgaagagtgaccggtcTAAAGGTGGTAATCCTCCAGACCTCAgtgagaaaacaccatcatcagtCAAAAGtgtgagatcaggatcatgtttGTCCAGCTCTGAGTCTCTCAAGAGTGACCAGTCAATGAATTATCCACTAGACCTCggagagaaaacaccatcatctgcccaAAGtgttgaatatgagtcagcagattcaggagacgagactcacaggagacacaagagcttcacagacaatctccagtcaatcttccagAATCTTGAGAGcaaaatgatcagatttctgaagaatcagcTGGAAAACTTTAGGAAAATCTTACAACACAAAAACAGACCAGAGTTTGTAAAAGACtttaatgagaacagaagcattatcacagaagcagctcttgatctcacactcttcttcctgagagagatgaatcaagatcaagctgctgatactctcctggatgagctgttcttcattaatcagcttaaatgtagcctgaagaagaagaaatatcaaagtgtgtttgaaggaattgctcagcaaggagactccacacttctgaataacatctacacagatctctatatcactcagggtgcgagtgaacaggtcaacactgaacatgagatcagacagattgaagctgcttccagacgtcatcagtcactagagatacaggttgaatgcaaacatttgtttgaagcagctgaacaagacgagcagatcagaactgtcctgacaaaaggagttgctggcatcgggaaatcagtctctgtgcaaaagtttgttctggattgggctgaagggaaagaaaatcaagacatcagcttcatatttcctcttccattcaaaGAGAtaaacttaaaggagaaagaaagacaaagtttaaaagacctcataactcagtttttcccagagactgaagaactgaaccttacaagaagcacacgattcaaagtcctgttcatccttgatggattggatgaatgtcgtcttcctctgaactttgctggtaatgagacgtgtcgtaatgtatcttcagcagtctctctggatgttctcctgacgaacctcatcaagggaaatctgcttccttctgctctcatctggatcaccagcagaccagcagctgcctgtaagattcctgctgactgtattgaccggctgacagagatacgaggattcaatgatgcccaaaaggaggagtacttcagaaagagactcacagatcagaatcaggccagagaaatcattgatcacattaaacagtcaaagagtctctttattatgtgccacatcccagtcttctgctggatttcagccactgttctccagaacatactgaaactgaaacacagggctcatgctgaaacactgcaggaatctcccaagactctgacacagatgtacacacactttctccgctttcagatccagcagagcagaagaaagtatgatggagaaaacacagcagatgtctcctgggatccgaacctcatcctttcactggggaaactggccttccagcagctggaaagaaacaatgtgatcttttatgagagcgatctgaaatactgtggcattgacgtctataaggcatcggtgtactcaggcatgtgtacccagatctttaaggaggagacgggGATCATTCTTGgcaccatgtactgctttcttcacttgagcattcaggagttcattgcagccctttatcaacatctgattctaGATATCGaacaaaaaaaagcagaaaagaaCAGAGATGAGTCCATGATTGATTTcctgaagactgcagtggacaaggctctggaaagtgagaatggacatctggacctttaccttcgcttccttctcggtctgtcacttcagtccaatcgacaactcttacgaggcctgttgacacagcaggatgacagagaccagagcaaagaggaaataattgcctacatcaagcagaaacttgaagggaatctgtctccagagagatccatcaatctgttctactgtctgaatgaactgaacgaccaaactctgctgaaagagattcagtctcacctcagtagaggaagtctgtcatctgctcgcctttcacctgcccagtggtctgctctggtctttgtgttgttgacctcagaggaggagctggaggagtttgagcttcagaaattccagagatcagacgagtgtctcatcagactatcagcagtcatcaaaacctccaaaagagctctgctacagggctgtaatctcactgttcagtgctgtgagagtttatcttcagttctacaatcctcaaactgtgtgctgagagagctggacctgagtaacaatgacctgcaggattcaggagtgaagcttctctctgatggactgaagagtcaacactgtaaactggagacactgagattgtctggctgtatggtgacagaggaaggctgtggttttctgtcatcagctctgacttcaaacccctcacacctgagagagctggatctgagctacaatcatccaggagattcaggagtcaagctgctctctgaacaactggaggatccaaactacacactggacaaactcaatctggatcatggaggagagacgaggattacagcaggactgcacaaatatgtctgtttcctcactctggatccaaacacagcaaacactttactcattctgtctgaggagaacagagaggtgaagagtgtgtgggagtatcagccgtatcctgaccatccagacagatttgatggtcttcctcaggtgttgtgcagagagagtgtgtgtggacgctgttactgggagattgactggagtggagatcatggtgtgtgtatatcagtgtcatataagagcatcggTAGGATGGGAGGAGGTCGTGAGTGTGCgtttggatataatgctcagtcctggagtttgatctgctcttcctccagattcacattcatacacaataACACACGCACTGATCTCCCAGTAAAGCGgatcagcaggagaataggagtgtttgtggatcacagtgcaggaactctgatcttcgacaacatctatagagacacaatgagcctcatccactctgtccagaccacattcactaagccgctctgccctgggtttgggctttattctggatcatcagtgaaactgagctgaagactgatgagagatttacccagaatcctctgcaggagcagtcagcagcagcagcaatgtgtgtgcgtgtgtgtgagagaggaagtgcgtgtgtgtgtgtgtgtgtgtgtgtgtgcgcgtgtgtgtgtgtgagagaggaagtgcgtgtgcgtgtgtgcacgtgtgtgtgtgtgtgtgtgtgcacgtgtgttcgtgtgtgtgtgtgttcgtgtgtgtgtgtgtttctcagtcttcatcagtgtcatcattgatgttgatgaagtgtcctccagaatgctgctgtgttcagatcagctcattcttgtcta
>TCONS_00055988
ctgaagagtgaccggtcTAAAGGTGGTAATCCTCCAGACCTCAgtgagaaaacaccatcatcagtCAAAAGgctacagggctgtaatctcactgttcagtgctgtgagagtttatcttcagttctacaatcctcaaactgtgtgctgagagagctggacctgagtaacaatgacctgcaggattcaggagtgaagcttctctctgatggactgaagagtcaacactgtaaactggagacactgagattgtctggctgtatggtgacagaggaaggctgtggttttctgtcatcagctctgacttcaaacccctcacacctgagagagctggatctgagctacaatcatccaggagattcaggagtcaagctgctctctgaacaactggaggatccaaactacacactggacaaactcaatctggatcatggaggagagacgaggattacagcaggactgcacaaatatgtctgtttcctcactctggatccaaacacagcaaacactttactcattctgtctgaggagaacagagaggtgaagagtgtgtgggagtatcagccgtatcctgaccatccagacagatttgatggtcttcctcaggtgttgtgcagagagagtgtgtgtggacgctgttactgggagattgactggagtggagatcatggtgtgtgtatatcagtgtcatataagagcatcggTAGGATGGGAGGAGGTCGTGAGTGTGCgtttggatataatgctcagtcctggagtttgatctgctcttcctccagattcacattcatacacaataACACACGCACTGATCTCCCAGTAAAGCGgatcagcaggagaataggagtgtttgtggatcacagtgcaggaactctgatcttcgacaacatctatagagacacaatgagcctcatccactctgtccagaccacattcactaagccgctctgccctgggtttgggctttattctggatcatcagtgaaactgagctga

Function

symbol description
si:ch211-237a4.2 Predicted to be involved in intracellular signal transduction.

GO:

id name namespace
GO:0035556 intracellular signal transduction biological_process
GO:0005524 ATP binding molecular_function
GO:0000166 nucleotide binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-060503-504 Predicted to be involved in intracellular signal transduction.

Ensembl:

ensembl_id ENSDARG00000103992

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00055987 False 3671 mRNA 0.45 10 34753619 34776147
TCONS_00055988 True 993 mRNA 0.47 5 34753927 34775762

Neighbor

gene id symbol gene type direction distance location
XLOC_028925 AL645691.2 coding downstream 164532 34553067 ~ 34589087 (-)
XLOC_028924 NA coding downstream 232683 34519504 ~ 34520936 (-)
XLOC_028923 NA coding downstream 258973 34486972 ~ 34494646 (-)
XLOC_028922 si:ch211-64i20.3 coding downstream 273008 34443650 ~ 34480611 (-)
XLOC_028921 CT025695.2 coding downstream 363499 34389152 ~ 34390120 (-)
XLOC_028927 NA coding upstream 21646 34797793 ~ 34799395 (-)
XLOC_028928 NA coding upstream 71613 34847760 ~ 34857130 (-)
XLOC_028929 NA coding upstream 276292 35052439 ~ 35053350 (-)
XLOC_028930 NA coding upstream 284000 35060147 ~ 35083283 (-)
XLOC_028931 BX000703.1 coding upstream 457150 35233297 ~ 35233413 (-)
XLOC_028920 CT025695.1 non-coding downstream 391198 34359175 ~ 34362421 (-)

Expression


Co-expression Network