XLOC_028928


Basic Information

Item Value
gene id XLOC_028928
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007115.7
NCBI id CM002888.2
chromosome length 78093715
location 34847760 ~ 34857130 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00058261
GAGAAGTGACAGTGAAGATCTGATCGGGAGAGTATACAAGAGATCTCATCGTTGTGACATTCCACATTGTCTCCAGTTTGGGACAATCACTCAATTACAATATGTGAGTCTTGAGAATGTGGCAATGTAAAGTGTGTGGCACAGAAAGTATCCAGTAGGAGGAAGACGAATGGTGACCCTGAAGAGGCACATCCTCATTTAAGAAAAAAGAAAGATGTCGAGTCCAGTCAATCTAAGGATTGTTTTTGGTGGGGATGAAGATGCAAGAAAGCTTGCACTTAAGACAGGAATCCCAAAGTCTGTGGATGAACTTGTCCTtgaaataatgactgtttttggTGTAAAGCAAAATTTCAGGCTCCAGTACAAAGATAAGGACTTTGGAAATGAATACATGAATCTCACATCAACCACTCAAATTGAAGACAGGGATACCCTGAAAGTGATTTTTCTGTCAACTGATGACTTTAACTCCTGCATGCATGAGACTGCACCTTTTAAATCGGACGTgttgatgataaaaaaaTCTCCGGAGTCAAGAACCAGTTCTTGGCCTCAGGTTTTTGTAATTCCTCGTTTTTCTTGTTCTGCTGAAATTCAGCTTCAGAGAGCTGACACAGAGTTCAACAAAAGTGAAATGCTACTTATTCCACCACCAAAATTAAGATCTGACATTCTTGAAGGCATGGCTGAGGAGATCTTTAGGTATGCTGCATACCCCACTGATAGTCAGCTTGATCAGGCAGCTGAAGCCTTGATAAATGTCCACCCTTGCTTGAGGGAAAAGGGAACTCGCACTGGTCATGAAGGATGGAAACACTATCTAAAGATAAAGATGGCTAATTTCCGCTCAAAACTCAGCAAGATTGGACACCCAGAAATCACTGTAAATTCACTTAGGAACAAGTGTGAAGGTCGGGGTAAAGCAGCATCAAACATCAAAAAGCCAAAAAAGGCTGAGGTGAATTTCCTTCCCTGCCTTCCAAGAGGAGAAACAGCTGATAGTATGGAGAAGGAAAGAATTGCTCTCTTAACtgaagtgcacTTGACCTTCTCCTATAGGCGACAAGAGTTGGTTGAGGACTTGCCAATGGTTTCTGATTTACAAAGTAGATGGCCTGCCCTGTTCACAGTCAATGAAATAAACGCAGAATTTATGAGGATAACGACTGTGCCTCTTCTGTCAAAGTTTTTCGCGCAGCTGGACAAATACACTGCTGATCTACAGAAGGTTTTCAGCAGCAAAGGAGGTGCTTCTGGACAGAAGATATCACGCATCATGACAGTTGCAGACAAGTGTGGTGACATACACATCAAGCGAGATTGTGTCATACAGAGTCTGTGTGTGTACTTCAATGAGGACATGACAACAGTTGTCAAAGAATTCGAGAGCAACCCTAAAGAAGCAGAAGCAAGAATTTCTGAGACCACTCTGGGGCTTTTTGTGATTCGCAAGGAAGGTGCTGGTGCTGAGGAGGAGCCAAGTGATGTTGGAGTTGTGATAGAGGGTGTAACGCTGCTAGAGAACCTAAAGAGTATTTCCTTTGGATTAGTAATTCTCTTTGGACTGATCTACGCTCTCAATTTAAGCTATCCTCAAGGTCTCAAGTTCACATTTGAATTCTTTCAGAAGGTACTGATGAACTTAGATGGCAGCAAGCTGTCCCCAAAGGTACAAgcacttaaaattaaaatgtttcagTGA
>TCONS_00058260
GAGAAGTGACAGTGAAGATCTGATCGGGAGAGTATACAAGAGATCTCATCGTTGTGACATTCCACATTGTCTCCAGTTTGGGACAATCACTCAATTACAATATGTGAGTCTTGAGAATGTGGCAATGTAAAGTGTGTGGCACAGAAAGTATCCAGTAGGAGGAAGACGAATGGTGACCCTGAAGAGGCACATCCTCATTTAAGAAAAAAGAAAGATGTCGAGTCCAGTCAATCTAAGGATTGTTTTTGGTGGGGATGAAGATGCAAGAAAGCTTGCACTTAAGACAGGAATCCCAAAGTCTGTGGATGAACTTGTCCTtgaaataatgactgtttttggTGTAAAGCAAAATTTCAGGCTCCAGTACAAAGATAAGGACTTTGGAAATGAATACATGAATCTCACATCAACCACTCAAATTGAAGACAGGGATACCCTGAAAGTGATTTTTCTGTCAACTGATGACTTTAACTCCTGCATGCATGAGACTGCACCTTTTAAATCGGACGTgttgatgataaaaaaaTCTCCGGAGTCAAGAACCAGTTCTTGGCCTCAGGTTTTTGTAATTCCTCGTTTTTCTTGTTCTGCTGAAATTCAGCTTCAGAGAGCTGACACAGAGTTCAACAAAAGTGAAATGCTACTTATTCCACCACCAAAATTAAGATCTGACATTCTTGAAGGCATGGCTGAGGAGATCTTTAGGTATGCTGCATACCCCACTGATAGTCAGCTTGATCAGGCAGCTGAAGCCTTGATAAATGTCCACCCTTGCTTGAGGGAAAAGGGAACTCGCACTGGTCATGAAGGATGGAAACACTATCTAAAGATAAAGATGGCTAATTTCCGCTCAAAACTCAGCAAGATTGGACACCCAGAAATCACTGTAAATTCACTTAGGAACAAGTGTGAAGGTCGGGGTAAAGCAGCATCAAACATCAAAAAGCCAAAAAAGGCTGAGGTGAATTTCCTTCCCTGCCTTCCAAGAGGAGAAACAGCTGATAGTATGGAGAAGGAAAGAATTGCTCTCTTAACtgaagCAACCCTAAAGAAGCAGAAGCAAGAATTTCTGAGACCACTCTGGGGCTTTTTGTGATTCGCAAGGAAGGTGCTGGTGCTGAGGAGGAGCCAAGTGATGTTGGAGTTGTGATAGAGGGTGTAACGCTGCTAGAGAACCTAAAGAGTATTTCCTTTGGATTAGTAATTCTCTTTGGACTGATCTACGCTCTCAATTTAAGCTATCCTCAAGGTCTCAAGTTCACATTTGAATTCTTTCAGAAGGTACTGATGAACTTAGATGGCAGCAAGCTGTCCCCAAAGGTACAAgcacttaaaattaaaatgtttcagTGA
>TCONS_00055990
GAGAAGTGACAGTGAAGATCTGATCGGGAGAGTATACAAGAGATCTCATCGTTGTGACATTCCACATTGTCTCCAGTTTGGGACAATCACTCAATTACAATATGTGAGTCTTGAGAATGTGGCAATGTAAAGTGTGTGGCACAGAAAGTATCCAGTAGGAGGAAGACGAATGGTGACCCTGAAGAGGCACATCCTCATTTAAGAAAAAAGAAAGATGTCGAGTCCAGTCAATCTAAGGATTGTTTTTGGTGGGGATGAAGATGCAAGAAAGCTTGCACTTAAGACAGGAATCCCAAAGTCTGTGGATGAACTTGTCCTtgaaataatgactgtttttggTGTAAAGCAAAATTTCAGGCTCCAGTACAAAGATAAGGACTTTGGAAATGAATACATGAATCTCACATCAACCACTCAAATTGAAGACAGGGATACCCTGAAAGTGATTTTTCTGTCAACTGATGACTTTAACTCCTGCATGCATGAGACTGCA

Function

GO:

id name namespace
GO:0042692 muscle cell differentiation biological_process
GO:0048741 skeletal muscle fiber development biological_process
GO:0048747 muscle fiber development biological_process
GO:0051146 striated muscle cell differentiation biological_process
GO:0007517 muscle organ development biological_process
GO:0010927 cellular component assembly involved in morphogenesis biological_process
GO:0055001 muscle cell development biological_process
GO:0055002 striated muscle cell development biological_process
GO:0055006 cardiac cell development biological_process
GO:0055013 cardiac muscle cell development biological_process
GO:0031032 actomyosin structure organization biological_process
GO:0014902 myotube differentiation biological_process
GO:0014904 myotube cell development biological_process
GO:0045214 sarcomere organization biological_process
GO:0030239 myofibril assembly biological_process
GO:0035914 skeletal muscle cell differentiation biological_process
GO:0061061 muscle structure development biological_process
GO:0060537 muscle tissue development biological_process
GO:0014706 striated muscle tissue development biological_process
GO:0043292 contractile fiber cellular_component
GO:0044449 obsolete contractile fiber part cellular_component
GO:0031672 A band cellular_component
GO:0030016 myofibril cellular_component
GO:0030017 sarcomere cellular_component

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

Ensembl:

ensembl_id ENSDARG00000098615

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00058261 False 1705 lncRNA 0.42 12 34847760 34857130
TCONS_00058260 False 1353 lncRNA 0.42 9 34847760 34857130
TCONS_00055990 True 493 lncRNA 0.41 5 34853066 34857130

Neighbor

gene id symbol gene type direction distance location
XLOC_028927 NA coding downstream 48365 34797793 ~ 34799395 (-)
XLOC_028926 si:ch211-237a4.2 coding downstream 71613 34753619 ~ 34776147 (-)
XLOC_028925 AL645691.2 coding downstream 258673 34553067 ~ 34589087 (-)
XLOC_028924 NA coding downstream 326824 34519504 ~ 34520936 (-)
XLOC_028923 NA coding downstream 353114 34486972 ~ 34494646 (-)
XLOC_028929 NA coding upstream 195309 35052439 ~ 35053350 (-)
XLOC_028930 NA coding upstream 203017 35060147 ~ 35083283 (-)
XLOC_028931 BX000703.1 coding upstream 376167 35233297 ~ 35233413 (-)
XLOC_028932 NA coding upstream 633847 35490977 ~ 35493425 (-)
XLOC_028933 NA coding upstream 834665 35691795 ~ 35692409 (-)
XLOC_028921 CT025695.2 non-coding downstream 457640 34389152 ~ 34390120 (-)

Expression


Co-expression Network